Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 0.0e+00 1432.9 807 100.0
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 9.5e-238 827.4 818 64.8
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 1.2e-224 783.9 830 62.7
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 3.5e-224 782.3 817 55.2
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 7.1e-217 758.1 817 54.6
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 2.1e-216 756.5 817 54.6
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 6.0e-216 755.0 818 54.8
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 1.7e-215 753.4 793 54.7
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 5.1e-215 751.9 820 55.5
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 2.1e-213 746.5 817 53.5
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 2.8e-213 746.1 817 54.3
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.1e-208 729.9 816 51.8
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 6.0e-208 728.4 817 53.2
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 2.3e-207 726.5 818 51.5
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 2.5e-206 723.0 821 58.2
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 5.3e-204 715.3 816 56.5
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 9.0e-204 714.5 834 50.7
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 5.8e-203 711.8 835 50.4
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 2.2e-202 709.9 816 50.9
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 2.1e-200 703.4 832 50.7
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 5.3e-196 688.7 807 51.1
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 4.5e-195 685.6 883 47.7
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 3.9e-191 672.5 799 50.3
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 6.7e-191 671.8 816 57.7
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 3.7e-189 666.0 817 52.6
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 1.4e-188 664.1 817 49.1
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 3.4e-187 659.4 822 48.3
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 3.4e-187 659.4 801 48.9
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 4.5e-187 659.1 798 49.5
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 2.9e-186 656.4 676 55.9
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 8.4e-186 654.8 817 48.7
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 1.1e-185 654.4 819 47.4
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.5e-185 652.1 822 51.6
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 5.5e-185 652.1 812 55.5
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 1.6e-184 650.6 913 45.2
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.5e-184 649.4 822 51.5
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 4.6e-184 649.0 822 53.8
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.9e-183 646.0 841 46.8
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.1e-182 644.4 816 47.3
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 3.1e-180 636.3 761 49.7
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 3.8e-178 629.4 817 47.1
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 5.0e-178 629.0 817 47.0
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 8.5e-178 628.2 829 47.9
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 8.5e-178 628.2 793 48.8
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 1.1e-177 627.9 768 49.2
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 1.1e-177 627.9 755 49.3
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 1.4e-177 627.5 817 47.1
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 3.6e-176 622.9 818 46.2
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 3.6e-176 622.9 816 45.8
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 1.4e-175 620.9 817 46.8
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 3.0e-175 619.8 816 46.3
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 5.1e-175 619.0 817 46.6
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 5.1e-175 619.0 817 46.6
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 5.1e-175 619.0 817 46.6
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 5.1e-175 619.0 817 46.6
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 1.5e-174 617.5 818 46.8
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 2.5e-174 616.7 811 47.1
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 4.3e-174 615.9 817 51.2
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 5.7e-174 615.5 817 46.6
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.3e-173 614.4 822 47.6
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 3.7e-173 612.8 816 46.3
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 4.8e-173 612.5 817 46.5
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 5.3e-172 609.0 764 47.8
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 5.3e-172 609.0 817 47.1
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 1.2e-171 607.8 817 45.8
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 1.2e-171 607.8 821 46.7
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 1.5e-171 607.4 835 44.9
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.7e-170 604.0 816 45.5
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.2e-170 603.6 890 48.2
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 4.2e-169 599.4 817 45.7
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 2.1e-168 597.0 815 47.0
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 2.1e-168 597.0 750 48.4
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 2.3e-167 593.6 796 45.7
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.1e-167 592.4 816 45.0
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 8.8e-167 591.7 816 44.6
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 4.1e-164 582.8 820 43.8
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 4.1e-164 582.8 819 50.2
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 6.5e-162 575.5 763 46.9
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 3.6e-160 569.7 817 43.0
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 4.7e-160 569.3 815 43.2
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 8.8e-159 565.1 812 45.1
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 1.8e-156 557.4 666 49.5
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 9.1e-156 555.1 780 44.4
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 2.6e-155 553.5 871 41.0
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 1.0e-154 551.6 780 50.3
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.2e-151 539.3 799 45.9
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 2.0e-150 537.3 665 47.2
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 2.6e-150 537.0 774 46.3
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 5.7e-150 535.8 800 43.1
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 1.3e-149 534.6 831 41.9
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.7e-149 534.3 925 39.5
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 7.0e-148 528.9 815 41.5
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 2.0e-142 510.8 666 44.9
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 9.1e-140 501.9 737 48.8
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 3.5e-139 500.0 741 41.8
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 7.7e-139 498.8 878 38.2
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.0e-138 498.4 879 37.9
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 5.7e-134 482.6 764 47.6
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 2.1e-120 437.6 737 39.3
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 9.8e-118 428.7 768 43.6
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 8.6e-114 415.6 831 34.7
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 2.1e-112 411.0 831 35.1
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 1.1e-108 398.7 375 55.7
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 2.4e-95 354.4 820 31.6
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 6.9e-95 352.8 314 63.1
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 5.8e-94 349.7 655 36.6
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.5e-89 334.3 329 57.8
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 8.1e-88 329.3 314 57.6
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 2.0e-86 324.7 312 57.7
Cpa.g.sc121.6 Carica papaya HOM05D004178 ORTHO05D005204 5.8e-86 323.2 240 66.7
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 5.8e-86 323.2 392 51.3
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.0e-82 312.4 395 45.1
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.4e-79 301.2 451 43.5
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 1.1e-76 292.4 300 53.7
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 5.5e-76 290.0 286 55.2
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 3.4e-70 270.8 393 40.2
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 6.7e-66 256.5 285 47.0
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.5e-54 218.8 143 76.2
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-54 216.5 664 28.3
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 9.4e-52 209.5 129 79.1
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 3.9e-50 204.1 117 84.6
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 2.7e-43 181.4 110 80.9
Ca_02791_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 4.7e-43 180.6 134 59.7
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 4.5e-30 137.5 622 24.8
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 3.6e-27 127.9 73 89.0
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 2.8e-24 118.2 183 43.2
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 7.2e-20 103.6 649 22.0
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 2.8e-19 101.7 671 22.7
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 5.7e-17 94.0 660 22.0
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 4.5e-14 84.3 53 77.4
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 3.3e-12 78.2 181 32.6
QL07p015796 Quercus lobata HOM05D004178 ORTHO05D005204 4.3e-12 77.8 64 67.2
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 3.6e-11 74.7 626 22.5
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 1.4e-10 72.8 129 34.9
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 8.9e-10 70.1 93 45.2
PGSC0003DMG403030108 Solanum tuberosum HOM05D004178 ORTHO05D005204 3.2e-07 61.6 55 60.0


User provided reference genes

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