Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1505.0 779 100.0
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 780 80.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 783 78.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 770 79.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 779 77.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 783 77.8
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 768 79.3
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 781 77.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 770 77.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 769 78.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 770 77.3
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 762 78.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 765 78.7
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 779 76.3
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 778 76.7
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 763 78.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 769 76.5
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 768 77.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 783 75.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 770 77.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 760 78.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 770 76.4
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 781 76.8
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 759 77.3
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 763 76.9
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 743 79.4
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 769 77.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 774 76.1
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 780 76.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 779 74.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 783 75.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 779 74.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 791 75.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 780 77.9
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 779 74.7
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 769 77.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1110.1 783 74.7
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1109.7 767 76.4
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 783 74.5
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1107.4 783 74.6
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 783 74.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 780 75.5
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 766 76.0
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 766 76.0
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 766 76.0
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 764 76.6
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 770 76.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 797 73.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1102.8 763 75.4
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 779 74.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 765 76.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 769 74.5
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 781 75.4
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 769 76.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 761 76.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 774 75.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1091.6 746 76.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 780 74.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1090.9 774 75.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1088.6 793 73.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1088.2 769 73.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1088.2 759 75.4
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 759 75.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1081.6 808 72.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1080.5 741 77.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1080.1 764 74.2
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1078.5 783 72.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1078.2 764 73.7
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1077.0 766 74.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1077.0 768 74.5
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1076.2 780 74.4
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1075.8 764 73.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1075.5 779 73.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 5.3e-312 1073.9 764 73.3
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 5.3e-312 1073.5 764 73.2
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 8.0e-311 1070.1 764 72.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 8.0e-311 1070.1 784 72.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.1e-310 1069.7 764 72.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 1.4e-310 1069.3 764 72.9
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-310 1069.3 764 72.9
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.8e-310 1068.9 777 73.4
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 4.0e-310 1067.8 765 73.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 4.0e-310 1067.8 779 73.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.5e-309 1065.8 761 73.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 7.6e-309 1063.5 762 74.4
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 4.9e-308 1060.8 795 71.7
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.1e-307 1059.7 777 73.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 4.2e-307 1057.7 760 72.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 1.0e-305 1053.1 759 72.5
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.3e-305 1052.0 772 71.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 6.7e-305 1050.4 779 72.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.5e-301 1037.7 787 70.5
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 6.4e-300 1033.9 746 72.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.4e-300 1033.9 771 70.3
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.0e-297 1026.5 772 70.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 7.4e-296 1020.4 806 68.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 6.1e-290 1000.7 769 69.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.7e-289 997.3 666 79.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.8e-284 981.5 761 68.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.4e-277 958.4 811 63.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.7e-268 929.5 666 73.4
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.2e-263 912.5 693 69.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.9e-261 904.4 764 62.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.9e-261 904.4 764 62.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.3e-257 892.5 768 60.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.0e-257 892.1 778 61.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.7e-253 877.5 659 69.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 9.8e-248 860.5 766 60.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 6.6e-244 847.8 664 69.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 5.5e-243 844.7 758 63.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 4.7e-242 841.6 641 68.8
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.3e-239 831.2 629 70.3
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.6e-237 826.6 750 61.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 2.2e-231 806.2 593 72.5
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.2e-214 749.2 551 73.0
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.2e-210 734.9 765 51.5
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.6e-205 720.3 748 51.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.4e-200 702.6 484 78.3
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.1e-185 652.9 498 68.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.4e-137 492.7 403 63.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.0e-132 478.4 824 38.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 9.2e-129 465.3 872 34.6
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.0e-124 450.3 255 89.0
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.5e-118 430.6 254 85.0
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 9.5e-118 428.7 359 62.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-113 415.2 254 82.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.4e-113 414.1 251 84.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.9e-111 406.8 237 85.2
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.4e-107 393.7 259 80.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.2e-97 360.5 246 77.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.7e-93 346.7 816 31.7
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.9e-92 342.8 202 82.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 6.2e-77 293.1 193 82.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 9.6e-70 269.2 203 70.0
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-66 259.2 164 76.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.1e-61 241.5 192 71.9
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.3e-61 240.0 233 57.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.4e-57 228.8 167 71.9
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.3e-54 217.2 130 86.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.1e-52 211.1 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.0e-51 208.4 197 60.9
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-50 204.5 223 50.7
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.2e-49 199.9 116 88.8
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.9e-47 194.1 120 83.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 7.7e-43 179.9 230 42.6
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.0e-42 177.2 111 87.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 6.5e-42 176.8 104 83.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.4e-38 164.1 111 76.6
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.2e-34 151.8 563 25.9
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.7e-29 135.6 99 69.7
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.4e-28 131.7 151 54.3
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 9.1e-28 129.8 99 67.7
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 9.1e-28 129.8 99 67.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.8e-26 124.4 81 77.8
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 5.7e-22 110.5 73 74.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.3e-21 109.4 63 81.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.2e-21 108.6 88 64.8
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.4e-20 105.9 59 79.7
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.8e-20 105.5 108 56.5
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.8e-20 105.5 57 87.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 7.0e-20 103.6 77 67.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 9.1e-20 103.2 59 83.1
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-17 96.3 102 54.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.3e-15 88.6 65 72.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 3.1e-12 78.2 43 79.1
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 7.8e-11 73.6 46 73.9
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.6e-10 70.5 58 63.8
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 4.7e-08 64.3 40 80.0
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 8.0e-08 63.5 55 60.0
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 9.8e-06 56.6 52 59.6


User provided reference genes

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