Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 2.1e-66 255.4 115 100.0
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.4e-64 247.7 115 94.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 94.8
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 93.9
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 94.8
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 93.9
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 93.9
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 94.8
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.9
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.0
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.0
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 93.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.4e-62 242.7 114 93.0
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 92.2
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 93.0
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 92.2
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 91.3
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 92.2
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 92.2
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 93.0
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 92.2
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 90.4
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 91.3
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 89.6
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 92.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 90.4
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 92.2
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 89.6
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 90.4
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 92.2
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 6.0e-61 237.3 114 90.4
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 89.6
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 90.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 89.6
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 92.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 89.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 89.6
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 88.7
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 88.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 6.6e-60 233.8 135 80.7
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 90.4
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.8
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-59 233.0 134 81.3
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.8
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 84.3
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 82.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 86.1
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 8.9e-57 223.4 105 93.3
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 4.4e-56 221.1 112 88.4
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 4.4e-56 221.1 112 88.4
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.3e-55 219.5 105 91.4
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.3e-55 219.5 105 91.4
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.9e-54 215.7 115 80.0
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 9.3e-54 213.4 105 89.5
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.6e-53 212.6 128 78.1
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 4.6e-53 211.1 115 80.9
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 4.6e-53 211.1 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 4.6e-53 211.1 113 80.5
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 6.0e-53 210.7 105 86.7
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.3e-52 209.5 114 78.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.3e-52 208.8 112 82.1
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.0e-52 208.4 105 85.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 5.1e-52 207.6 105 84.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.5e-51 206.1 115 78.3
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 73.9
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.6e-50 201.4 114 74.6
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 8.1e-50 200.3 112 75.9
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-49 199.9 112 75.9
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-49 199.9 112 75.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 2.4e-49 198.7 115 74.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 73.0
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 9.0e-49 196.8 98 90.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.3e-47 193.0 130 68.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.2e-47 192.2 114 71.1
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 69.6
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.2e-45 186.4 115 70.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.6e-45 186.0 114 69.3
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 3.3e-43 178.3 180 52.8
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 9.6e-43 176.8 88 89.8
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.6e-42 176.0 115 61.7
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 8.1e-42 173.7 84 92.9
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.8e-41 172.6 114 69.3
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 3.1e-41 171.8 88 88.6
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 4.0e-41 171.4 115 70.4
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 5.3e-41 171.0 90 85.6
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 9.0e-41 170.2 93 81.7
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.5e-40 167.9 80 92.5
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 1.3e-39 166.4 88 85.2
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.7e-39 166.0 80 90.0
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 2.9e-39 165.2 80 90.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.8e-39 164.9 94 79.8
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.1e-38 163.3 82 87.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 2.4e-38 162.2 79 88.6
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 4.2e-38 161.4 81 85.2
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 5.5e-38 161.0 80 86.2
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.1e-37 159.1 81 84.0
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 4.6e-37 157.9 80 83.8
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.8e-36 156.0 81 84.0
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 6.7e-36 154.1 77 89.6
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.5e-35 152.1 84 81.0
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 2.0e-32 142.5 110 56.4
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 3.5e-29 131.7 111 50.5
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 3.3e-27 125.2 64 87.5
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 9.0e-25 117.1 61 80.3
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.3e-23 113.2 97 51.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-21 106.7 113 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 1.6e-21 106.3 114 44.7
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.6e-21 106.3 56 83.9
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.6e-21 106.3 54 88.9
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.7e-21 105.5 71 66.2
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.3e-18 96.7 113 45.1
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 6.3e-18 94.4 48 83.3
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.2e-16 90.1 70 64.3
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.0e-15 87.0 119 37.0
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 1.3e-15 86.7 64 51.6
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.6e-13 79.7 104 40.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 9.7e-11 70.5 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.7e-10 68.6 62 56.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.1e-09 67.0 112 33.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 9.1e-09 63.9 112 34.8
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.4e-08 62.0 115 28.7
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.3e-07 60.1 113 26.5
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.2e-07 59.3 114 30.7
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 3.8e-07 58.5 88 38.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 3.8e-07 58.5 113 31.0
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 6.5e-07 57.8 118 28.8
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 6.5e-07 57.8 113 28.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.4e-06 56.6 114 30.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.5e-06 55.8 112 27.7
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.5e-06 54.7 117 29.9


User provided reference genes

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