Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 3.6e-312 1074.7 528 100.0
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 5.4e-290 1000.3 528 90.5
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.2e-281 972.6 529 87.3
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 8.6e-280 966.5 531 87.4
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.6e-278 962.2 528 87.1
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 2.1e-278 961.8 528 87.1
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 3.6e-278 961.1 533 87.2
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 4.7e-278 960.7 532 87.2
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 1.4e-277 959.1 528 86.7
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.2e-276 956.1 528 87.3
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 8.3e-275 949.9 538 84.4
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.1e-274 949.5 539 85.5
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 1.2e-273 946.0 529 84.7
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.0e-273 945.3 528 86.6
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 1.7e-272 942.2 525 85.7
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 7.3e-271 936.8 531 85.1
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 4.7e-270 934.1 538 84.0
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 6.2e-270 933.7 547 82.8
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 5.2e-269 930.6 527 85.4
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 6.4e-267 923.7 539 82.4
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 6.4e-267 923.7 538 82.0
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.1e-266 922.9 540 83.1
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 3.2e-266 921.4 538 82.3
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 9.2e-266 919.8 589 77.6
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 1.0e-264 916.4 534 81.8
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 1.3e-264 916.0 535 82.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 3.0e-264 914.8 540 82.4
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 3.0e-264 914.8 531 83.1
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 5.0e-264 914.1 535 81.9
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 8.6e-264 913.3 540 82.2
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.1e-263 912.9 531 82.9
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 1.5e-263 912.5 532 82.3
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 2.5e-263 911.8 535 81.3
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 4.3e-263 911.0 538 82.3
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 7.3e-263 910.2 536 81.0
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 9.5e-263 909.8 534 81.1
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 9.5e-263 909.8 531 82.5
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 4.7e-262 907.5 535 82.6
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.2e-262 907.1 543 80.3
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 8.1e-262 906.7 529 83.6
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 6.8e-261 903.7 541 80.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 8.9e-261 903.3 532 82.7
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 8.9e-261 903.3 533 80.5
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.5e-260 902.5 535 81.1
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 2.0e-260 902.1 545 80.4
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 3.4e-260 901.4 531 81.5
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 5.8e-260 900.6 537 81.0
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.2e-259 898.7 569 76.8
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 2.9e-259 898.3 533 80.7
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 3.7e-259 897.9 522 83.3
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 6.4e-259 897.1 541 81.7
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 8.3e-259 896.7 538 80.7
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 8.3e-259 896.7 556 77.9
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 3.2e-258 894.8 561 77.7
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 4.1e-258 894.4 538 80.5
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 4.1e-258 894.4 531 79.7
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 7.1e-258 893.6 538 80.1
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 7.1e-258 893.6 537 80.6
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 9.2e-258 893.3 520 82.1
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.2e-257 892.9 541 79.7
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 1.2e-257 892.9 590 74.7
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.6e-257 892.5 541 79.1
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 2.7e-257 891.7 535 80.9
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 6.0e-257 890.6 541 80.2
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 6.0e-257 890.6 520 81.9
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 7.8e-257 890.2 531 80.0
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.7e-256 889.0 520 82.1
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 3.0e-256 888.3 543 79.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 8.6e-256 886.7 545 78.7
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 5.6e-255 884.0 524 82.3
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.8e-254 881.7 522 81.8
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.1e-253 879.8 555 78.7
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 4.4e-252 874.4 538 78.3
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.3e-251 872.8 522 81.4
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.1e-250 869.8 539 78.8
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.4e-250 869.4 535 80.0
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-249 866.3 536 77.4
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.2e-249 866.3 536 77.4
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 3.5e-249 864.8 521 78.9
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 3.0e-248 861.7 538 77.5
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 3.9e-248 861.3 535 78.3
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 5.1e-248 860.9 489 83.4
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 6.6e-248 860.5 535 78.3
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 3.3e-247 858.2 543 77.3
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 4.3e-247 857.8 533 79.0
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 4.7e-246 854.4 500 82.0
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.1e-245 853.2 542 77.1
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 2.4e-245 852.0 541 78.6
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.1e-242 843.2 483 82.4
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 3.2e-242 841.6 515 77.7
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.2e-241 839.7 536 76.5
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.6e-241 839.3 530 77.4
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 2.7e-241 838.6 530 77.5
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 5.6e-239 830.9 543 75.0
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.3e-238 829.7 531 75.9
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 3.8e-235 818.1 537 73.7
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 3.2e-234 815.1 559 72.5
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 4.2e-234 814.7 544 73.9
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 2.1e-233 812.4 544 73.9
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 3.5e-233 811.6 559 72.3
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 8.4e-227 790.4 532 72.9
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 3.5e-225 785.0 534 71.7
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.5e-223 779.6 535 71.2
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.1e-222 775.8 477 77.1
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 4.2e-218 761.5 398 88.4
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 9.7e-215 750.4 426 81.7
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.5e-212 743.0 541 68.4
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 2.5e-210 735.7 441 79.1
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 4.2e-210 734.9 518 69.7
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 7.2e-202 707.6 388 85.8
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 3.6e-201 705.3 418 82.5
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.6e-196 689.1 510 69.0
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 7.7e-188 661.0 401 76.8
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 5.5e-186 654.8 332 90.7
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.2e-156 557.4 509 56.0
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 6.6e-155 551.6 283 89.8
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 1.1e-154 550.8 471 57.3
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 7.3e-154 548.1 406 68.7
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.7e-153 545.4 343 75.8
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.5e-138 496.5 346 70.2
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 1.7e-134 483.8 451 55.7
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 7.8e-132 474.9 393 60.6
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 4.3e-130 469.2 451 51.4
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 9.6e-122 441.4 315 68.9
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.9e-114 417.2 270 77.4
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 2.3e-91 340.5 181 85.6
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.7e-91 339.0 229 75.5
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.8e-88 330.9 182 84.6
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 3.0e-75 287.0 176 76.1
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.7e-57 228.0 135 76.3
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 7.3e-45 186.0 115 77.4
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 6.8e-43 179.5 102 79.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 2.1e-36 157.9 81 88.9
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 3.0e-30 137.5 68 94.1
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 2.3e-22 111.3 58 89.7
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 8.6e-22 109.4 60 85.0
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 8.6e-22 109.4 60 85.0
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 1.4e-19 102.1 53 88.7
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 2.9e-17 94.4 50 80.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 4.0e-11 73.9 78 48.7


User provided reference genes

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