Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 0.0e+00 1356.7 735 100.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 0.0e+00 1130.9 740 81.4
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 0.0e+00 1083.9 735 81.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 0.0e+00 1081.2 759 77.5
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1079.7 688 82.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1077.8 736 76.8
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.0e-311 1072.0 738 77.6
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 1.3e-310 1069.3 736 79.2
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.1e-309 1066.2 750 78.9
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.5e-309 1063.9 738 79.4
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 9.4e-309 1063.1 735 78.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.6e-308 1062.4 738 78.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 3.9e-307 1057.7 740 76.9
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.4e-306 1054.3 790 72.2
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 9.7e-306 1053.1 751 78.4
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 1.7e-305 1052.4 736 77.3
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 3.8e-302 1041.2 738 76.3
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 1.1e-301 1039.6 733 77.5
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.9e-301 1038.9 736 77.0
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.9e-301 1038.9 684 81.4
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 9.4e-301 1036.6 691 79.7
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.5e-298 1029.2 740 74.5
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 4.4e-298 1027.7 737 75.6
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 1.7e-297 1025.8 735 75.4
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.8e-297 1025.0 734 74.7
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 4.8e-297 1024.2 737 75.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 7.0e-296 1020.4 741 75.8
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 2.6e-295 1018.5 728 77.6
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.3e-294 1016.1 737 75.2
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 7.2e-293 1010.4 729 75.0
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 8.0e-292 1006.9 732 75.3
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.0e-291 1006.5 738 74.5
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.3e-291 1005.4 739 74.3
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.0e-291 1005.0 727 75.9
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.0e-291 1004.6 739 74.4
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 5.2e-291 1004.2 750 73.2
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.5e-290 1000.3 739 74.2
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 6.3e-289 997.3 691 78.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.3e-289 997.3 730 72.7
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 8.2e-289 996.9 726 75.3
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.8e-288 995.7 727 75.5
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.6e-287 992.6 735 74.3
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.8e-286 988.0 737 74.1
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 3.8e-286 988.0 743 73.5
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 8.5e-286 986.9 737 74.1
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.5e-285 985.3 666 78.2
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 4.2e-285 984.6 728 72.7
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 7.2e-285 983.8 685 76.2
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 7.2e-285 983.8 727 75.0
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 9.4e-285 983.4 739 74.2
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 9.4e-285 983.4 730 74.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.7e-284 981.9 733 71.2
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 3.6e-284 981.5 743 73.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.5e-282 976.1 736 75.4
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 3.4e-282 974.9 668 77.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 5.7e-282 974.2 807 68.6
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.2e-281 972.2 672 75.7
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 2.8e-281 971.8 688 76.5
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.1e-280 969.9 735 74.8
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.4e-280 969.5 735 74.6
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 5.4e-280 967.6 580 83.6
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 7.0e-280 967.2 735 72.4
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.9e-279 964.1 738 72.8
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.3e-278 962.2 625 78.6
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.5e-277 959.5 722 72.2
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.5e-277 958.7 732 72.0
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 3.2e-277 958.4 716 75.0
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 5.5e-277 957.6 616 79.7
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 5.2e-275 951.0 622 80.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.5e-274 949.5 731 73.1
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 7.5e-274 947.2 731 72.9
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.7e-273 946.0 744 73.0
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.3e-273 944.1 665 73.8
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.4e-272 943.0 688 71.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.4e-272 941.0 717 72.2
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.0e-272 940.6 731 68.9
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 2.9e-270 935.3 736 72.4
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 2.9e-270 935.3 647 78.5
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.5e-269 932.9 736 72.1
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.0e-267 924.9 666 73.4
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 5.2e-267 924.5 505 89.5
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 5.2e-267 924.5 732 66.8
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 7.5e-266 920.6 732 66.7
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 9.8e-266 920.2 654 73.9
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.7e-265 919.5 656 73.6
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 9.2e-264 913.7 736 67.7
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.2e-263 913.3 524 84.9
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.5e-263 911.8 740 69.5
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 6.8e-259 897.5 728 67.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.1e-252 874.0 748 67.2
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 7.1e-248 860.9 734 66.8
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.6e-244 849.7 471 87.0
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 8.4e-241 837.4 769 60.7
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 7.8e-231 804.3 525 76.0
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.3e-229 798.5 632 71.5
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.8e-228 795.0 747 63.6
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.9e-221 773.1 700 60.0
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 5.5e-216 755.0 538 68.0
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 7.1e-216 754.6 687 59.8
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 2.5e-200 703.0 497 68.2
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-197 694.1 406 82.3
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.3e-197 692.6 693 60.9
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 4.5e-186 655.6 344 90.7
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.0e-177 627.9 569 55.5
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.6e-173 613.2 542 67.9
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 6.3e-172 608.6 464 62.5
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.2e-169 600.1 555 65.9
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 6.5e-169 598.6 471 61.8
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.7e-165 585.5 364 78.3
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 2.0e-133 480.7 502 50.4
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 5.4e-131 472.6 498 55.2
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.6e-122 444.5 561 44.9
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.9e-120 437.6 252 80.2
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 1.9e-112 411.0 608 41.4
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 4.0e-102 376.7 522 39.7
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.9e-99 367.9 219 83.6
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 4.3e-96 356.7 347 63.4
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 4.6e-90 336.7 197 83.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.5e-85 321.6 263 66.2
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.7e-71 273.9 157 81.5
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.0e-65 255.8 369 52.8
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 8.0e-58 229.6 172 66.3
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.0e-54 216.5 319 46.1
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.1e-46 191.0 245 54.7
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.2e-45 189.1 233 56.2
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.2e-42 179.1 100 85.0
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-32 145.6 302 42.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.7e-31 141.0 95 74.7
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.8e-25 122.1 76 80.3
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 3.1e-25 121.3 231 51.1
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 7.8e-21 106.7 105 53.3
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 9.9e-16 89.7 105 62.9
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.2e-14 83.2 208 37.0
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.5e-11 75.9 205 48.3
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.9e-11 75.5 167 37.7
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 8.1e-10 70.1 167 35.9
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 3.4e-08 64.7 50 56.0
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 3.4e-08 64.7 81 59.3
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.4e-06 58.5 72 50.0


User provided reference genes

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