Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.6e-213 745.7 359 100.0
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.2e-146 522.7 328 78.0
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.9e-145 519.6 330 76.4
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 2.3e-143 512.7 328 75.3
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 8.8e-143 510.8 327 77.1
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 9.7e-142 507.3 327 76.8
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.8e-141 505.8 329 75.1
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 2.8e-141 505.8 328 75.3
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.4e-140 503.4 329 76.0
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.8e-140 503.1 329 74.8
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 3.2e-137 492.3 326 73.0
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 3.2e-137 492.3 330 72.7
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 9.4e-137 490.7 327 73.4
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.2e-136 490.3 328 72.9
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 6.1e-136 488.0 328 73.2
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.0e-135 487.3 326 74.2
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.0e-135 487.3 326 74.2
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.3e-135 486.1 329 72.3
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 3.0e-135 485.7 329 72.9
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 5.7e-134 481.5 333 72.4
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 9.7e-134 480.7 328 72.9
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 1.7e-133 479.9 335 71.3
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.1e-132 477.2 327 72.2
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.1e-132 477.2 333 70.3
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.1e-132 477.2 333 70.3
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.4e-132 476.9 327 71.6
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 1.4e-132 476.9 335 70.7
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.4e-132 476.1 327 71.6
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 2.4e-132 476.1 331 71.0
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 3.1e-132 475.7 330 71.5
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 7.0e-132 474.6 331 70.7
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.5e-131 473.4 329 70.8
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 3.5e-131 472.2 329 72.0
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 3.5e-131 472.2 330 70.9
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.3e-130 470.3 330 69.4
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.7e-130 469.9 330 72.1
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 5.0e-130 468.4 330 70.9
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 1.1e-129 467.2 314 71.3
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.9e-129 466.5 328 71.0
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 2.5e-129 466.1 329 71.4
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 3.2e-129 465.7 335 69.6
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 4.2e-129 465.3 330 70.6
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 7.2e-129 464.5 330 71.2
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 9.4e-129 464.2 329 70.8
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.6e-128 463.4 329 70.5
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 2.1e-128 463.0 330 70.3
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 1.0e-127 460.7 331 67.1
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 1.0e-127 460.7 330 68.5
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.8e-127 459.9 329 69.0
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 2.3e-127 459.5 335 67.8
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 6.7e-127 458.0 330 67.9
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 6.7e-127 458.0 328 67.4
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 8.8e-127 457.6 332 67.8
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.5e-126 456.8 333 67.9
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 2.0e-126 456.4 328 67.4
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 2.6e-126 456.1 327 69.4
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 3.3e-126 455.7 330 68.2
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 7.4e-126 454.5 334 65.9
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.3e-125 453.8 332 66.9
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 1.3e-125 453.8 338 66.6
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 3.7e-125 452.2 330 67.0
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 8.2e-125 451.1 332 68.1
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 8.2e-125 451.1 325 68.0
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.4e-124 450.3 333 66.7
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 7.0e-124 448.0 331 67.1
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 1.2e-123 447.2 332 67.2
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.2e-123 447.2 327 66.1
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 2.0e-123 446.4 335 67.2
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.6e-123 446.0 340 64.1
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 5.9e-123 444.9 329 66.9
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.3e-122 443.7 332 67.2
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.7e-122 443.4 333 67.0
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 1.7e-122 443.4 333 65.5
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 1.7e-122 443.4 328 67.4
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.8e-122 442.2 330 67.3
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 8.5e-122 441.0 330 67.0
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.1e-121 440.7 328 67.1
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 2.5e-121 439.5 330 68.5
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 3.2e-121 439.1 330 66.1
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.6e-120 436.8 330 65.2
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 3.6e-120 435.6 329 66.6
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 8.0e-120 434.5 327 66.7
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.4e-119 433.7 323 66.9
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 5.2e-119 431.8 327 65.1
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 8.8e-119 431.0 331 66.5
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 8.8e-119 431.0 363 59.8
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.5e-118 430.3 328 65.9
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 2.0e-118 429.9 338 63.9
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 2.0e-118 429.9 285 74.4
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 2.0e-118 429.9 314 67.5
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 7.5e-118 427.9 326 64.4
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.2e-117 426.4 325 65.2
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 1.8e-116 423.3 329 64.7
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 4.1e-116 422.2 325 65.2
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 7.0e-116 421.4 328 65.2
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.2e-115 420.6 322 65.2
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.5e-115 419.1 328 65.2
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 4.5e-115 418.7 331 63.1
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 4.5e-115 418.7 331 63.1
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 7.7e-115 417.9 328 64.0
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 7.7e-115 417.9 327 63.3
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 1.7e-114 416.8 290 71.7
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 2.9e-114 416.0 340 62.6
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.8e-114 415.6 336 62.5
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.1e-113 414.1 332 63.0
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.5e-113 413.7 354 60.2
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 4.2e-113 412.1 339 61.7
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 7.2e-113 411.4 293 70.0
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 7.2e-113 411.4 324 63.9
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 1.2e-112 410.6 325 62.5
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.6e-112 410.2 312 66.0
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.7e-112 409.5 329 63.5
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 2.7e-112 409.5 332 62.0
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 3.6e-112 409.1 328 61.9
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 1.0e-111 407.5 328 61.9
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 5.2e-111 405.2 329 61.7
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 3.7e-109 399.1 333 61.0
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.4e-108 397.1 329 61.1
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.4e-108 397.1 328 61.0
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.0e-107 393.3 325 60.3
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 2.7e-107 392.9 331 60.1
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 4.5e-107 392.1 323 61.9
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 4.5e-107 392.1 313 64.2
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 7.7e-107 391.3 339 58.7
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 7.7e-107 391.3 323 61.9
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.0e-106 391.0 334 62.9
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.3e-106 390.6 323 61.6
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 2.9e-106 389.4 329 60.5
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.5e-105 387.1 320 59.4
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 4.2e-105 385.6 332 59.3
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 4.7e-104 382.1 318 59.4
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.4e-103 380.6 328 59.8
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 4.4e-102 375.6 330 58.5
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 3.7e-101 372.5 325 57.8
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 3.1e-100 369.4 328 57.6
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 3.1e-100 369.4 328 57.6
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.0e-99 366.7 325 57.8
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 3.5e-99 365.9 325 57.8
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 1.7e-98 363.6 329 56.2
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 1.9e-97 360.1 354 54.0
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 1.2e-96 357.5 314 56.4
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.6e-94 349.7 341 57.8
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 2.2e-93 346.7 327 55.4
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 6.0e-91 338.6 320 57.2
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 3.9e-90 335.9 317 56.8
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 3.9e-90 335.9 317 56.8
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 2.8e-88 329.7 312 57.4
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 3.6e-80 302.8 293 56.3
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 4.0e-79 299.3 325 49.5
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 3.7e-77 292.7 296 55.7
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.3e-74 283.5 262 57.6
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 6.6e-74 282.0 322 47.5
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 7.3e-73 278.5 288 54.2
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 2.1e-72 276.9 310 51.9
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 7.6e-70 268.5 332 46.4
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 8.4e-69 265.0 330 43.9
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 6.2e-64 248.8 244 54.1
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 3.4e-62 243.0 377 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 1.8e-50 204.1 322 40.4
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 1.4e-36 157.9 232 42.2
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.9e-36 157.5 143 49.7
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 3.2e-36 156.8 232 42.2
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 2.1e-35 154.1 223 43.0
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 9.0e-31 138.7 100 62.0
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 2.6e-30 137.1 148 56.1
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 5.0e-29 132.9 300 31.0
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-28 131.3 118 57.6
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 1.4e-28 131.3 118 57.6
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 3.2e-28 130.2 118 56.8
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 9.1e-23 112.1 334 29.6
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 3.8e-21 106.7 178 42.1
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.5e-20 104.0 74 60.8
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 3.6e-19 100.1 64 68.8
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 6.1e-19 99.4 102 51.0
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-17 95.1 102 52.0
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 1.1e-17 95.1 392 25.8
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 9.7e-17 92.0 81 66.7
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 4.8e-16 89.7 96 54.2
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 3.8e-13 80.1 47 72.3
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 3.0e-10 70.5 40 72.5
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.8e-08 63.9 82 42.7
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 3.1e-07 60.5 51 45.1
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 7.0e-07 59.3 33 75.8
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 7.0e-07 59.3 33 75.8
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 1.6e-06 58.2 85 43.5
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.0e-06 57.8 44 61.4
SHI21127 Sapria himalayana HOM05D003678 ORTHO05D004340 2.6e-06 57.4 36 63.9
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 4.5e-06 56.6 99 37.4


User provided reference genes

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