Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.3e-177 626.7 413 100.0
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.6e-106 389.8 411 57.7
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.6e-103 380.6 438 60.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.6e-100 369.4 410 57.3
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.9e-97 359.8 408 56.4
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.4e-91 340.9 399 56.9
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.8e-91 340.5 238 76.5
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.8e-91 340.5 238 76.5
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 7.6e-90 335.1 233 76.0
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.9e-89 332.4 236 74.6
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 6.4e-89 332.0 237 73.4
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 6.4e-89 332.0 237 73.4
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 7.1e-88 328.6 236 75.4
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 9.3e-88 328.2 235 72.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.2e-87 327.8 235 74.5
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.0e-86 324.7 235 73.2
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 1.7e-86 323.9 236 73.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.7e-86 323.9 417 51.1
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.7e-86 323.9 234 73.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.0e-86 323.2 235 73.2
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 6.6e-86 322.0 234 73.9
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.9e-85 320.5 233 73.0
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 4.3e-85 319.3 414 54.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 5.6e-85 318.9 239 72.8
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 9.6e-85 318.2 241 73.0
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.3e-84 317.8 235 71.9
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.6e-84 317.4 238 71.8
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 3.6e-84 316.2 235 74.5
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 1.8e-83 313.9 407 52.6
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.0e-83 312.8 398 56.3
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 2.0e-82 310.5 232 74.1
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.6e-82 310.1 238 71.4
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.3e-81 307.8 237 70.9
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.7e-81 307.4 232 69.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.2e-81 307.0 403 49.6
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.9e-81 306.6 236 70.8
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 8.4e-81 305.1 230 71.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-80 304.3 240 69.2
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 4.2e-80 302.8 235 70.6
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 5.4e-80 302.4 238 70.2
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.3e-80 301.6 242 68.6
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.6e-79 300.8 243 68.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.6e-79 300.8 238 67.6
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.6e-79 300.8 236 71.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.6e-79 300.8 409 52.8
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 2.1e-79 300.4 236 69.1
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 6.0e-79 298.9 239 67.8
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 5.1e-78 295.8 238 68.9
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 8.7e-78 295.0 233 68.2
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.9e-77 293.9 410 50.2
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.5e-77 293.5 233 71.2
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.3e-77 292.7 235 69.4
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 5.6e-77 292.4 233 68.2
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 7.4e-77 292.0 230 68.3
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 7.4e-77 292.0 233 70.4
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.3e-76 291.2 405 47.2
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.6e-76 290.8 243 66.7
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.1e-76 290.4 233 67.8
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 3.6e-76 289.7 239 69.0
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.6e-76 289.7 235 66.8
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 4.8e-76 289.3 238 66.8
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 6.2e-76 288.9 239 65.7
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 8.1e-76 288.5 411 49.9
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.1e-76 288.5 411 46.7
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.1e-75 286.6 407 49.6
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 4.0e-75 286.2 235 68.5
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 5.3e-75 285.8 235 68.5
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 6.9e-75 285.4 233 69.1
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 6.9e-75 285.4 404 51.5
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.2e-74 284.6 225 68.4
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.5e-74 284.3 230 67.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.5e-74 284.3 239 67.4
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.5e-74 284.3 238 65.5
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.4e-74 283.1 220 68.6
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 7.6e-74 282.0 419 45.3
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 7.6e-74 282.0 236 66.1
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 9.9e-74 281.6 238 64.7
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.7e-73 280.8 232 64.7
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.8e-73 279.6 236 66.1
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.4e-72 277.7 233 67.0
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.4e-72 276.9 240 63.8
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 2.4e-72 276.9 240 64.2
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 3.2e-72 276.6 238 65.1
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.2e-71 274.6 233 67.0
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.6e-71 274.2 240 65.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.6e-71 274.2 245 62.4
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.5e-71 273.1 402 51.5
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.3e-70 271.2 236 62.3
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 5.1e-70 269.2 238 64.7
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 6.7e-70 268.9 238 64.7
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 6.7e-70 268.9 401 55.1
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 6.7e-70 268.9 401 49.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.1e-69 268.1 240 64.6
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.3e-69 266.5 233 65.2
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.3e-69 266.2 232 63.4
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.3e-69 266.2 240 63.8
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 5.6e-69 265.8 230 66.1
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.3e-68 264.6 236 61.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 2.1e-68 263.8 230 66.1
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.1e-68 263.8 401 50.4
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.7e-68 263.1 239 62.3
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 3.7e-68 263.1 235 63.8
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.8e-68 262.7 244 61.9
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 6.2e-68 262.3 417 44.6
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.1e-67 261.5 405 44.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.4e-67 261.2 240 62.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.0e-67 259.6 239 63.6
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 5.3e-67 259.2 239 61.5
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.9e-67 258.8 232 62.9
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 6.9e-67 258.8 221 65.2
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.1e-64 251.5 225 61.3
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.2e-64 250.0 234 60.7
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 4.2e-64 249.6 231 62.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.2e-64 249.6 230 57.8
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 9.3e-64 248.4 240 59.6
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 6.0e-63 245.7 199 69.3
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.8e-62 244.2 391 45.8
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.9e-62 243.0 235 60.4
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 5.1e-62 242.7 224 61.6
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.7e-62 242.3 240 57.9
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.5e-61 241.1 228 60.1
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.8e-60 236.9 253 55.3
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-59 235.0 235 57.9
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.1e-59 235.0 240 57.9
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.4e-59 233.8 238 58.8
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 3.1e-59 233.4 235 59.1
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 5.3e-59 232.6 235 58.7
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 5.3e-59 232.6 235 58.7
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 5.3e-59 232.6 235 58.7
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 6.9e-59 232.3 235 58.7
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 9.0e-59 231.9 234 58.5
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.4e-58 229.9 239 57.3
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 5.9e-58 229.2 236 57.2
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.3e-57 228.0 239 56.9
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.1e-56 224.9 242 56.6
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-56 224.9 239 58.6
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.1e-56 224.9 239 58.6
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.4e-56 224.6 235 60.4
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 5.5e-56 222.6 142 75.4
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.1e-55 220.7 236 58.1
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 2.1e-55 220.7 236 58.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 4.3e-53 213.0 261 49.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 2.8e-52 210.3 200 61.5
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.8e-52 210.3 237 54.9
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.0e-50 204.1 255 54.1
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.2e-48 196.8 233 51.5
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.2e-48 196.8 233 51.5
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 9.4e-48 195.3 233 51.1
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 7.9e-47 192.2 156 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.4e-46 191.4 245 51.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 3.0e-46 190.3 182 57.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.4e-45 186.4 169 62.1
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 5.0e-41 172.9 236 48.7
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.0e-37 161.0 260 41.9
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.1e-35 153.7 234 44.4
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.0e-33 146.4 87 80.5
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.2e-31 141.7 151 56.3
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-27 128.6 103 66.0
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.4e-27 127.5 133 48.1
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.5e-21 108.2 128 51.6
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 3.7e-20 103.6 89 62.9
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 6.3e-20 102.8 137 50.4
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.1e-19 102.1 145 37.2
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.7e-17 94.7 131 49.6
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.7e-17 94.7 131 49.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-16 91.7 86 57.0
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.6e-15 88.2 67 62.7
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 3.0e-14 84.0 222 33.3
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.8e-12 77.4 129 44.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 2.4e-11 74.3 96 42.7
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-10 71.6 42 90.5
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 1.0e-06 58.9 105 38.1
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 1.8e-06 58.2 126 32.5
SMO361G0460 Selaginella moellendorffii HOM05D002258 ORTHO05D002539 3.0e-06 57.4 117 35.9
SMO361G0544 Selaginella moellendorffii HOM05D002258 ORTHO05D002539 3.0e-06 57.4 117 35.9
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 3.0e-06 57.4 141 31.2
CBR_g34252 Chara braunii HOM05D002258 ORTHO05D002539 6.8e-06 56.2 143 32.2
Haze_21029 Corylus avellana HOM05D002258 ORTHO05D002539 8.9e-06 55.8 133 32.3


User provided reference genes

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