Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27902 Nelumbo nucifera HOM05D000113 ORTHO05D014827 2.9e-34 147.9 69 100.0
Actinidia30661 Actinidia chinensis HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Ah.03g136280 Amaranthus hybridus HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Aqoxy1G00504 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
CSS0001396 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
CiPaw.05G112500 Carya illinoinensis HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Dinv16087 Davidia involucrata HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Dinv27008 Davidia involucrata HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Eucgr.H04653 Eucalyptus grandis HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Glyma.13G342400 Glycine max HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Glyma.15G031900 Glycine max HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
PSO017G2450 Papaver somniferum HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Phvul.004G165266 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Phvul.L011643 Phaseolus vulgaris HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Potri.010G172500 Populus trichocarpa HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
Rhsim12G0028300 Rhododendron simsii HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
TAR622G0398 Trochodendron aralioides HOM05D000113 ORTHO05D004634 9.9e-11 69.7 39 82.1
MSTRG.13314 Avicennia marina HOM05D000113 ORTHO05D004634 1.3e-10 69.3 39 79.5
AUR62024132 Chenopodium quinoa HOM05D000113 ORTHO05D004634 1.3e-10 69.3 39 79.5
Lsat_1_v5_gn_4_3040 Lactuca sativa HOM05D000113 ORTHO05D004634 1.3e-10 69.3 39 79.5
Oeu019036.1 Olea europaea HOM05D000113 ORTHO05D004634 1.3e-10 69.3 39 79.5
Sabra10G0131700 Salix brachista HOM05D000113 ORTHO05D004634 1.3e-10 69.3 39 79.5
vmacro01072 Vaccinium macrocarpon HOM05D000113 ORTHO05D004634 1.3e-10 69.3 39 79.5
arahy.Tifrunner.gnm1.ann1.FVMK5B Arachis hypogaea HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
arahy.Tifrunner.gnm1.ann1.LX1KXR Arachis hypogaea HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
arahy.Tifrunner.gnm1.ann1.LY2VHI Arachis hypogaea HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
arahy.Tifrunner.gnm1.ann1.U4BLLZ Arachis hypogaea HOM05D000113 ORTHO05D004634 1.7e-10 68.9 38 81.6
arahy.Tifrunner.gnm1.ann1.XJJ2Y4 Arachis hypogaea HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
Ca_01274_v3 Cicer arietinum L. HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
Haze_12387 Corylus avellana HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
MELO3C015733.2 Cucumis melo HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
CsaV3_7G027360 Cucumis sativus L. HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
ECA234G1819 Erigeron canadensis HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 76.9
Migut.E00026 Erythranthe guttata HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 76.9
Lalb_Chr14g0372271 Lupinus albus HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
MD16G1117100 Malus domestica HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
Manes.16G136600 Manihot esculenta HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
Psat0s698g0040 Pisum sativum HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
QL03p054215 Quercus lobata HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
SalBow8G3598 Salvia bowleyana HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 76.9
SEGI_28213 Sequoiadendron giganteum HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
TPR.G145 Trifolium pratense HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
VMungo1080G1368 Vigna mungo HOM05D000113 ORTHO05D004634 1.7e-10 68.9 39 79.5
ATR0605G003 Amborella trichopoda HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 79.5
CAN.G959.46 Capsicum annuum HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Cc09_g10090 Coffea canephora HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Duzib187G1430 Durio zibethinus HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Lsat_1_v5_gn_3_4241 Lactuca sativa HOM05D003509 ORTHO05D014827 2.2e-10 68.6 36 88.9
Lj8C80G9 Lonicera japonica HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Nn4g22369 Nelumbo nucifera HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 79.5
Nitab4.5_0000148g0090 Nicotiana tabacum HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Peaxi162Scf00128g01138 Petunia axillaris HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
PGR044G0800 Punica granatum HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
PGR119G0528 Punica granatum HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Solyc10g076910.2 Solanum lycopersicum HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Sopen10g028600 Solanum pennellii HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
PGSC0003DMG400007192 Solanum tuberosum HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
THA.LOC104820521 Tarenaya hassleriana HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Thecc.07G168000 Theobroma cacao HOM05D000113 ORTHO05D004634 2.2e-10 68.6 39 76.9
Aa31LG9G13310 Aethionema arabicum HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
AL6G23600 Arabidopsis lyrata HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
EL10Ac1g00166 Beta vulgaris HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
EL10Ac9g21442 Beta vulgaris HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
BcaNung01180 Brassica carinata HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
A02p01640 Brassica napus HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
C02p05850 Brassica napus HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
BolC2t06530H Brassica oleracea HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
BraA02t05143Z Brassica rapa HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
Carub.0006s1118 Capsella rubella HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
Ciclev10030531m.g Citrus clementina HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 2.9e-10 68.2 39 74.4
Thhalv10012468m.g Eutrema salsugineum HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
Gohir.A13G122700 Gossypium hirsutum HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
Gohir.D13G126800 Gossypium hirsutum HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
Gorai.013G141900 Gossypium raimondii HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 74.4
HanXRQChr12g0385401 Helianthus annuus HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
Sp6g30960 Schrenkiella parvula HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
Zm00001eb105730 Zea mays HOM05D000113 ORTHO05D004634 2.9e-10 68.2 39 76.9
CANSAT80G2661 Cannabis sativa HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
AUR62005595 Chenopodium quinoa HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
FvH4_4g24000 Fragaria vesca HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
FAN12G3517 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
FAN17G0033 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
FAN22G0844 Fragaria x ananassa HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
Lj3g0026728 Lotus japonicus HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
Os07g0508000 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 74.4
Prupe.1G229100 Prunus persica HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
RcHm_v2.0_Chr4g0430661 Rosa chinensis HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 76.9
Sc06g0000370 Simmondsia chinensis HOM05D000113 ORTHO05D004634 3.8e-10 67.8 39 74.4
Haze_04386 Corylus avellana HOM05D000113 ORTHO05D004634 4.9e-10 67.4 39 76.9
HPP92_020092 Vanilla planifolia HOM05D000113 ORTHO05D004634 4.9e-10 67.4 39 74.4
AT5G13010 Arabidopsis thaliana HOM05D000113 ORTHO05D004634 6.4e-10 67.0 39 74.4
Medtr2g098440 Medicago truncatula HOM05D000113 ORTHO05D004634 6.4e-10 67.0 39 74.4
SHI21147 Sapria himalayana HOM05D000113 ORTHO05D004634 6.4e-10 67.0 39 74.4
SGA_v2.0_scaffold1G00333 Striga asiatica HOM05D000113 ORTHO05D004634 6.4e-10 67.0 39 74.4
SGA_v2.0_scaffold87G27143 Striga asiatica HOM05D000113 ORTHO05D004634 6.4e-10 67.0 39 74.4
CSS0020206 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 8.4e-10 66.6 39 79.5
FAN25G3356 Fragaria x ananassa HOM05D000113 ORTHO05D004634 8.4e-10 66.6 39 71.8
Sed0009802 Sechium edule HOM05D000113 ORTHO05D004634 8.4e-10 66.6 39 74.4
Cpa.g.sc701.2 Carica papaya HOM05D000113 ORTHO05D004634 1.4e-09 65.9 39 76.9
DCAR_030388 Daucus carota HOM05D000113 ORTHO05D004634 1.4e-09 65.9 39 71.8
Medtr3g054400 Medicago truncatula HOM05D000113 ORTHO05D004634 1.4e-09 65.9 39 74.4
TWI18G0274 Tripterygium wilfordii HOM05D000113 ORTHO05D004634 1.4e-09 65.9 39 74.4
CARHR200450 Cardamine hirsuta HOM05D000113 ORTHO05D004634 1.9e-09 65.5 39 74.4
FAN21G1231 Fragaria x ananassa HOM05D000113 ORTHO05D004634 1.9e-09 65.5 39 69.2
RcHm_v2.0_Chr5g0022111 Rosa chinensis HOM05D000113 ORTHO05D004634 1.9e-09 65.5 39 71.8
Lsat_1_v5_gn_7_82301 Lactuca sativa HOM05D000113 ORTHO05D014827 2.4e-09 65.1 36 83.3
Hund14457 Selenicereus undatus HOM05D000113 ORTHO05D004634 2.4e-09 65.1 39 74.4
Thecc.08G194000 Theobroma cacao HOM05D000113 ORTHO05D004634 2.4e-09 65.1 39 74.4
unitig_744.g24418 Utricularia gibba HOM05D000113 ORTHO05D004634 3.2e-09 64.7 38 73.7
CBR_g50319 Chara braunii HOM05D000113 ORTHO05D004634 7.1e-09 63.5 39 66.7
FAN11G3859 Fragaria x ananassa HOM05D000113 ORTHO05D004634 7.1e-09 63.5 39 66.7
Lj6g0023430 Lotus japonicus HOM05D000113 ORTHO05D004634 7.1e-09 63.5 37 75.7
Pp3c23_5290 Physcomitrium patens HOM05D000113 ORTHO05D004634 9.3e-09 63.2 36 77.8
QL07p034890 Quercus lobata HOM05D000113 ORTHO05D004634 1.2e-08 62.8 38 76.3
FvH4_3g13400 Fragaria vesca HOM05D000113 ORTHO05D004634 1.6e-08 62.4 39 64.1
HanXRQChr15g0464301 Helianthus annuus HOM05D000113 ORTHO05D004634 4.6e-08 60.8 39 69.2
Lj6g0009222 Lotus japonicus HOM05D000113 ORTHO05D004634 4.6e-08 60.8 39 66.7
PSO478G4217 Papaver somniferum HOM05D000113 ORTHO05D004634 4.6e-08 60.8 39 71.8
Aqoxy7G03775 Aquilegia oxysepala HOM05D000113 ORTHO05D004634 6.0e-08 60.5 39 69.2
Thhalv10012221m.g Eutrema salsugineum HOM05D000113 ORTHO05D004634 1.0e-07 59.7 39 66.7
PSO478G4152 Papaver somniferum HOM05D000113 ORTHO05D004634 2.3e-07 58.5 39 69.2
Mapoly0074s0050 Marchantia polymorpha HOM05D000113 ORTHO05D004634 1.1e-06 56.2 39 56.4
Prupe.4G121400 Prunus persica HOM05D000113 ORTHO05D004634 2.5e-06 55.1 34 70.6
Cre24.g755347 Chlamydomonas reinhardtii HOM05D000113 ORTHO05D004634 3.3e-06 54.7 39 59.0
DCAR_011488 Daucus carota HOM05D000113 ORTHO05D004634 3.3e-06 54.7 41 63.4


User provided reference genes

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