Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1629.0 812 100.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1493.8 842 88.0
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1458.0 835 86.6
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1449.1 842 85.6
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1409.0 846 82.9
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1396.3 835 82.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1394.0 921 77.3
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1389.0 844 80.9
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1387.5 844 80.8
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 838 81.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1373.6 845 80.6
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 908 75.4
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1367.4 849 79.4
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1366.7 845 80.1
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1366.3 845 80.1
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 846 80.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 857 79.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1363.2 845 79.8
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 842 80.4
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1362.1 842 79.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1360.5 846 79.7
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 839 80.1
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 845 79.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 851 79.6
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 832 80.0
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 842 79.7
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 851 79.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 851 79.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1355.9 842 80.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1355.5 845 79.2
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1355.5 848 79.6
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1352.0 842 79.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1350.9 842 78.6
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1350.9 842 79.5
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 835 79.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 837 79.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 851 79.1
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 842 79.5
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 862 77.6
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 865 77.7
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1344.7 845 79.1
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 809 81.0
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 842 78.6
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 839 78.4
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1342.4 839 78.1
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1340.5 849 78.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 820 80.6
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 842 78.3
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1339.3 845 78.9
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 872 78.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1334.3 839 78.3
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1333.9 845 78.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1330.5 839 78.3
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 847 77.1
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1323.5 843 78.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1315.8 844 78.4
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 842 77.4
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1311.6 854 75.8
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1310.8 845 76.6
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1309.3 894 73.2
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 838 77.1
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1306.2 864 75.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1300.4 847 76.5
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 909 72.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 838 76.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1294.3 940 69.9
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1291.6 854 74.7
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1285.8 854 74.5
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1281.5 854 74.2
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1279.2 840 73.5
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1278.1 863 73.5
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1277.7 850 75.1
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1268.1 785 78.7
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1260.4 913 69.7
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1253.8 913 69.1
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1247.3 865 72.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1245.7 865 72.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1245.3 865 72.1
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1245.3 865 72.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 865 72.0
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 865 72.0
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 865 72.0
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1239.9 865 71.4
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1238.8 865 71.9
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1233.8 865 71.1
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1232.2 865 71.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1227.2 855 70.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1217.6 759 79.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1166.4 726 78.8
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1112.1 838 68.4
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1111.7 838 67.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 2.2e-311 1072.0 842 61.8
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 5.9e-304 1047.3 834 61.4
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 9.7e-299 1030.0 880 61.5
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.1e-297 1026.5 851 64.9
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.0e-292 1008.1 849 65.3
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 7.5e-291 1003.8 1141 51.7
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 9.7e-291 1003.4 838 59.1
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 6.3e-282 974.2 622 76.8
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.8e-271 938.3 696 69.1
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.9e-262 909.4 805 59.8
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.3e-262 908.7 726 67.4
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.4e-225 786.2 602 65.4
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.9e-224 781.2 472 80.3
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 5.1e-207 725.3 685 58.0
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 8.2e-205 718.0 405 84.0
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-200 703.4 591 63.6
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 8.8e-191 671.4 433 79.0
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 3.3e-190 669.5 468 73.1
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.7e-171 606.7 356 80.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-170 604.0 341 86.5
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.4e-166 589.3 845 40.2
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.0e-163 580.5 346 84.7
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 9.2e-156 555.1 856 38.4
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.2e-134 485.0 824 35.9
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.9e-125 453.0 431 56.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.4e-117 425.6 260 77.7
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.2e-116 423.7 327 59.6
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.9e-113 414.5 1008 30.0
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 9.9e-102 375.6 593 42.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.4e-101 372.9 331 55.9
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.7e-99 367.5 347 58.5
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 3.3e-89 334.0 238 72.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 6.9e-79 299.7 219 68.0
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.0e-77 293.5 319 48.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 6.5e-77 293.1 165 84.8
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.7e-75 287.7 157 82.2
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-42 178.7 97 87.6
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.1e-39 169.5 116 69.8
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-39 168.3 101 77.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.6e-37 160.2 113 68.1
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-30 139.4 106 67.9
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-29 136.0 85 78.8
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-28 132.9 125 63.2
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-28 131.0 78 82.1
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 7.3e-28 130.2 87 73.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-27 129.4 87 74.7
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-27 129.0 109 62.4
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.6e-27 127.9 96 69.8
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 4.7e-27 127.5 131 55.7
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 5.2e-26 124.0 78 76.9
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.6e-25 121.7 103 63.1
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.6e-25 121.7 67 82.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 4.4e-25 120.9 80 70.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-24 119.0 75 78.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.2e-24 118.6 185 43.8
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-24 117.5 68 77.9
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-23 114.4 96 61.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-22 110.5 61 80.3
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.3e-21 109.4 153 45.8
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-19 101.7 115 49.6
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.1e-18 99.8 192 34.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-18 98.2 82 62.2
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 7.5e-17 93.6 52 84.6
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-16 92.8 52 84.6
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.9e-15 89.0 54 83.3
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.5e-12 78.6 87 52.9
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.5e-12 78.6 87 52.9
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 7.3e-12 77.0 49 77.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 6.2e-11 73.9 37 91.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.2e-11 73.9 79 51.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 6.8e-10 70.5 85 52.9
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.4e-08 63.5 36 83.3
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 1.1e-07 63.2 39 79.5
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 6.0e-06 57.4 41 68.3


User provided reference genes

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