Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.5e-130 468.8 233 100.0
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.8e-120 433.7 233 93.1
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 3.6e-89 332.0 233 72.1
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.4e-88 330.1 233 74.2
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.5e-82 309.3 233 70.4
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 3.6e-81 305.4 233 68.2
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 9.9e-79 297.4 241 65.6
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.4e-77 292.7 233 67.4
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.2e-77 292.4 234 68.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.7e-76 289.3 234 65.8
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 6.0e-76 288.1 229 64.2
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.0e-75 285.8 233 65.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 8.6e-75 284.3 233 64.4
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 8.6e-75 284.3 233 64.4
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.1e-74 283.9 233 61.4
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.5e-74 283.5 233 63.9
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.5e-74 283.5 233 63.9
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.3e-74 282.3 233 64.8
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 4.3e-74 282.0 233 63.5
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 4.3e-74 282.0 235 64.7
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.2e-73 280.4 233 61.4
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.6e-73 280.0 233 62.7
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.1e-73 279.6 238 63.4
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.7e-73 278.5 233 64.4
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 8.1e-73 277.7 237 64.1
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.1e-72 277.3 233 62.7
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.1e-72 277.3 233 63.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.4e-72 276.9 233 63.9
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 2.4e-72 276.2 235 61.3
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 3.1e-72 275.8 235 60.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 4.0e-72 275.4 233 61.8
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 4.0e-72 275.4 233 63.5
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 5.2e-72 275.0 235 63.8
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 5.2e-72 275.0 233 61.8
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 5.2e-72 275.0 234 63.2
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 6.9e-72 274.6 230 63.5
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.9e-72 274.6 233 61.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.2e-71 273.9 240 61.2
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.2e-71 273.9 238 63.4
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-71 273.5 233 61.4
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.0e-71 273.1 233 61.8
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.0e-71 273.1 233 62.7
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 2.6e-71 272.7 234 62.0
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 3.4e-71 272.3 242 60.3
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 4.4e-71 271.9 233 61.8
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.6e-71 271.2 234 62.0
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.2e-70 269.6 235 60.9
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.8e-70 268.9 234 61.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.9e-70 268.5 233 60.9
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.9e-70 268.5 233 63.1
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.2e-69 265.4 240 59.6
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.6e-68 263.5 233 60.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.6e-68 263.5 236 61.0
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.6e-68 263.5 233 60.9
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.0e-68 261.5 240 59.2
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 2.3e-67 259.6 233 61.8
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.6e-67 258.1 233 59.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 8.7e-67 257.7 208 64.9
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-66 255.4 207 62.3
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 5.6e-66 255.0 229 56.8
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.8e-65 251.9 234 57.7
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.8e-64 250.0 242 54.5
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 3.1e-64 249.2 233 55.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 6.9e-64 248.1 229 60.3
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 9.0e-64 247.7 242 56.6
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.2e-63 247.3 233 58.8
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.2e-63 247.3 214 59.3
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.5e-63 246.9 242 56.2
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 2.6e-63 246.1 275 51.3
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.5e-63 245.4 239 56.5
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 5.8e-63 245.0 242 57.4
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 9.9e-63 244.2 239 56.9
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.2e-62 243.0 242 55.8
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 2.2e-62 243.0 233 55.8
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 6.4e-62 241.5 242 55.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.4e-61 240.4 213 60.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.9e-61 240.0 239 56.1
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.2e-61 239.2 242 55.0
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 7.1e-61 238.0 242 53.7
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 3.9e-59 232.3 205 57.6
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 5.1e-59 231.9 270 50.7
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.1e-59 231.9 190 61.1
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 5.1e-59 231.9 221 58.8
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 8.7e-59 231.1 235 56.2
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 2.5e-58 229.6 214 60.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.6e-57 226.9 214 56.5
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 8.1e-57 224.6 210 58.1
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.8e-56 223.4 235 54.5
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 5.3e-56 221.9 267 47.9
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.2e-55 220.7 229 55.9
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 3.4e-55 219.2 224 53.1
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.5e-55 218.8 163 66.9
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 8.4e-54 214.5 189 59.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 2.4e-53 213.0 233 54.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 2.4e-53 213.0 181 65.2
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.5e-52 209.1 181 64.6
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 4.6e-52 208.8 234 52.6
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.3e-51 207.2 122 79.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.3e-51 206.5 225 52.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.3e-51 206.5 234 52.1
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.0e-51 206.1 240 51.2
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 4.3e-50 202.2 220 50.9
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.3e-49 200.7 212 54.7
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.8e-49 199.5 266 46.6
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.6e-47 193.0 252 46.0
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.4e-46 188.0 234 47.4
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.0e-43 179.5 115 72.2
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.1e-42 177.6 255 44.3
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.3e-42 176.0 218 48.2
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.4e-40 170.6 181 53.6
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.8e-40 170.2 135 63.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.3e-40 168.7 96 79.2
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 3.8e-38 162.5 182 51.6
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.4e-37 160.6 235 44.7
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.0e-35 152.9 174 53.4
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.7e-34 148.7 217 41.5
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.7e-33 147.1 201 46.3
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 3.6e-28 129.4 105 62.9
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 9.7e-26 121.3 70 82.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 5.3e-24 115.5 180 42.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 2.5e-21 106.7 66 66.7
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.2e-21 105.9 57 80.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 9.4e-21 104.8 184 38.6
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 6.3e-17 92.0 97 48.5
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.1e-16 89.4 49 81.6
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-13 81.3 49 79.6
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.1e-13 81.3 60 66.7
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.5e-13 80.1 62 66.1
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.2e-13 79.7 49 77.6
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 5.5e-13 79.0 49 69.4
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 5.5e-13 79.0 62 62.9
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 7.2e-13 78.6 71 59.2
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.7e-12 76.6 48 77.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.5e-10 70.9 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.3e-10 69.7 43 76.7
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.3e-09 65.5 67 53.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.0e-06 58.2 56 53.6


User provided reference genes

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