Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15587 Nelumbo nucifera HOM05D000104 ORTHO05D049302 8.1e-51 203.4 97 100.0
Nn2g15125 Nelumbo nucifera HOM05D000104 ORTHO05D005891 3.1e-34 148.3 125 65.6
Nn7g36404 Nelumbo nucifera HOM05D000104 ORTHO05D005891 8.7e-29 130.2 123 58.5
TAR369G0737 Trochodendron aralioides HOM05D000104 ORTHO05D005891 1.3e-24 116.3 122 55.7
TAR369G0997 Trochodendron aralioides HOM05D000104 ORTHO05D005891 1.3e-24 116.3 122 55.7
Potri.006G047100 Populus trichocarpa HOM05D000104 ORTHO05D005891 1.8e-21 105.9 120 52.5
PSO339G5863 Papaver somniferum HOM05D000104 ORTHO05D005891 3.9e-21 104.8 114 50.9
Thecc.05G148000 Theobroma cacao HOM05D000104 ORTHO05D005891 5.1e-21 104.4 120 52.5
TWI53G0966 Tripterygium wilfordii HOM05D000104 ORTHO05D005891 1.1e-20 103.2 119 52.9
Dinv39659 Davidia involucrata HOM05D000104 ORTHO05D005891 1.9e-20 102.4 122 50.0
Duzib106G2014 Durio zibethinus HOM05D000104 ORTHO05D005891 3.3e-20 101.7 120 51.7
PSO384G1272 Papaver somniferum HOM05D000104 ORTHO05D005891 3.3e-20 101.7 114 50.0
Ciclev10004142m.g Citrus clementina HOM05D000104 ORTHO05D005891 2.1e-19 99.0 120 51.7
Potri.016G043500 Populus trichocarpa HOM05D000104 ORTHO05D005891 2.8e-19 98.6 119 51.3
Sabra06G0032800 Salix brachista HOM05D000104 ORTHO05D005891 2.8e-19 98.6 120 50.8
TWI74G1174 Tripterygium wilfordii HOM05D000104 ORTHO05D005891 2.8e-19 98.6 119 52.9
Cfa016778 Carpinus fangiana HOM05D000104 ORTHO05D005891 8.2e-19 97.1 124 47.6
Haze_19788 Corylus avellana HOM05D000104 ORTHO05D005891 1.1e-18 96.7 124 47.6
Haze_19790 Corylus avellana HOM05D000104 ORTHO05D005891 1.1e-18 96.7 124 47.6
CiPaw.09G040400 Carya illinoinensis HOM05D000104 ORTHO05D005891 3.1e-18 95.1 124 46.8
Gohir.A09G121000 Gossypium hirsutum HOM05D000104 ORTHO05D005891 4.0e-18 94.7 119 49.6
Gohir.D09G117100 Gossypium hirsutum HOM05D000104 ORTHO05D005891 4.0e-18 94.7 119 49.6
Gorai.006G135500 Gossypium raimondii HOM05D000104 ORTHO05D005891 4.0e-18 94.7 119 49.6
MD11G1158800 Malus domestica HOM05D000104 ORTHO05D005891 4.0e-18 94.7 123 47.2
QL07p003748 Quercus lobata HOM05D000104 ORTHO05D005891 4.0e-18 94.7 124 44.4
Dinv18670 Davidia involucrata HOM05D000104 ORTHO05D005891 5.3e-18 94.4 124 46.8
Manes.09G018100 Manihot esculenta HOM05D000104 ORTHO05D005891 5.3e-18 94.4 105 54.3
GSVIVG01033231001 Vitis vinifera HOM05D000104 ORTHO05D005891 5.3e-18 94.4 124 46.8
Aqoxy5G00045 Aquilegia oxysepala HOM05D000104 ORTHO05D005891 1.2e-17 93.2 119 47.1
CSS0030896 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005891 1.2e-17 93.2 124 46.0
Cpa.g.sc182.16 Carica papaya HOM05D000104 ORTHO05D005891 2.6e-17 92.0 120 49.2
MD03G1136600 Malus domestica HOM05D000104 ORTHO05D005891 3.4e-17 91.7 124 46.8
TAR623G0750 Trochodendron aralioides HOM05D000104 ORTHO05D005891 5.8e-17 90.9 95 56.8
Prupe.7G053300 Prunus persica HOM05D000104 ORTHO05D005891 7.6e-17 90.5 124 46.0
RcHm_v2.0_Chr3g0483871 Rosa chinensis HOM05D000104 ORTHO05D005891 1.0e-16 90.1 124 45.2
Hma1.2p1_0110F.1_g052850 Hydrangea macrophylla HOM05D000104 ORTHO05D005891 1.3e-16 89.7 124 44.4
Psat6g121600 Pisum sativum HOM05D000104 ORTHO05D005891 1.7e-16 89.4 94 54.3
MBI13_g30332_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005891 2.2e-16 89.0 130 43.8
Atru.chr1.1229 Acer truncatum HOM05D000104 ORTHO05D005891 3.8e-16 88.2 55 80.0
FAN09G4422 Fragaria x ananassa HOM05D000104 ORTHO05D005891 3.8e-16 88.2 124 45.2
FAN14G5411 Fragaria x ananassa HOM05D000104 ORTHO05D005891 3.8e-16 88.2 124 45.2
FvH4_6g24570 Fragaria vesca HOM05D000104 ORTHO05D005891 4.9e-16 87.8 124 45.2
FAN02G4202 Fragaria x ananassa HOM05D000104 ORTHO05D005891 4.9e-16 87.8 124 45.2
Hma1.2p1_1997F.1_g310440 Hydrangea macrophylla HOM05D000104 ORTHO05D005891 6.5e-16 87.4 124 43.5
Sed0002389 Sechium edule HOM05D000104 ORTHO05D005891 6.5e-16 87.4 123 45.5
Glyma.19G136000 Glycine max HOM05D000104 ORTHO05D005891 1.9e-15 85.9 121 43.8
CiPaw.10G035500 Carya illinoinensis HOM05D000104 ORTHO05D005891 3.2e-15 85.1 125 43.2
ClCG04G003710 Citrullus lanatus HOM05D000104 ORTHO05D005891 3.2e-15 85.1 126 44.4
Lj1C1125T8 Lonicera japonica HOM05D000104 ORTHO05D005891 4.2e-15 84.7 78 57.7
vmacro21967 Vaccinium macrocarpon HOM05D000104 ORTHO05D005891 4.2e-15 84.7 113 47.8
MELO3C026332.2 Cucumis melo HOM05D000104 ORTHO05D005891 5.5e-15 84.3 70 62.9
FAN05G2243 Fragaria x ananassa HOM05D000104 ORTHO05D005891 5.5e-15 84.3 124 43.5
Hund19132 Selenicereus undatus HOM05D000104 ORTHO05D005891 5.5e-15 84.3 86 55.8
Ca_12259_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005891 9.3e-15 83.6 61 70.5
Phvul.001G129200 Phaseolus vulgaris HOM05D000104 ORTHO05D005891 9.3e-15 83.6 122 42.6
arahy.Tifrunner.gnm1.ann1.NU01L9 Arachis hypogaea HOM05D000104 ORTHO05D005891 1.2e-14 83.2 120 43.3
Rhsim03G0029000 Rhododendron simsii HOM05D000104 ORTHO05D005891 1.2e-14 83.2 55 74.5
TPR.G19660 Trifolium pratense HOM05D000104 ORTHO05D005891 1.2e-14 83.2 61 70.5
AT3G57300 Arabidopsis thaliana HOM05D000104 ORTHO05D005891 1.6e-14 82.8 121 46.3
arahy.Tifrunner.gnm1.ann1.KD6P16 Arachis hypogaea HOM05D000104 ORTHO05D005891 2.1e-14 82.4 120 43.3
AUR62026097 Chenopodium quinoa HOM05D000104 ORTHO05D005891 2.1e-14 82.4 54 75.9
EL10Ac3g07138 Beta vulgaris HOM05D000104 ORTHO05D005891 3.5e-14 81.6 54 75.9
Sc19g0008530 Simmondsia chinensis HOM05D000104 ORTHO05D005891 3.5e-14 81.6 52 78.8
DCAR_013037 Daucus carota HOM05D000104 ORTHO05D005891 4.6e-14 81.3 121 44.6
CsaV3_4G027520 Cucumis sativus L. HOM05D000104 ORTHO05D005891 6.0e-14 80.9 68 61.8
Lj1g0026239 Lotus japonicus HOM05D000104 ORTHO05D005891 6.0e-14 80.9 121 44.6
Actinidia39201 Actinidia chinensis HOM05D000104 ORTHO05D005891 7.9e-14 80.5 55 70.9
AL5G38840 Arabidopsis lyrata HOM05D000104 ORTHO05D005891 7.9e-14 80.5 119 45.4
Carub.0001s3808 Capsella rubella HOM05D000104 ORTHO05D005891 7.9e-14 80.5 119 42.0
Ca_08427_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005891 7.9e-14 80.5 108 46.3
AUR62024511 Chenopodium quinoa HOM05D000104 ORTHO05D005891 1.0e-13 80.1 54 72.2
Glyma.03G133700 Glycine max HOM05D000104 ORTHO05D005891 1.0e-13 80.1 122 41.8
VMungo1383G1381 Vigna mungo HOM05D000104 ORTHO05D005891 1.8e-13 79.3 118 42.4
Eucgr.A02310 Eucalyptus grandis HOM05D000104 ORTHO05D005891 2.3e-13 79.0 62 64.5
Psat3g074520 Pisum sativum HOM05D000104 ORTHO05D005891 2.3e-13 79.0 67 58.2
PGR004G1210 Punica granatum HOM05D000104 ORTHO05D005891 2.3e-13 79.0 55 70.9
THA.LOC104817420 Tarenaya hassleriana HOM05D000104 ORTHO05D005891 3.9e-13 78.2 62 62.9
Ah.04g151440 Amaranthus hybridus HOM05D002616 ORTHO05D005891 5.1e-13 77.8 54 72.2
ATR0721G053 Amborella trichopoda HOM05D000104 ORTHO05D005891 5.1e-13 77.8 117 37.6
Lalb_Chr21g0316591 Lupinus albus HOM05D000104 ORTHO05D005891 6.7e-13 77.4 61 65.6
TPR.G18256 Trifolium pratense HOM05D000104 ORTHO05D005891 6.7e-13 77.4 121 41.3
arahy.Tifrunner.gnm1.ann1.EUAM8L Arachis hypogaea HOM05D000104 ORTHO05D005891 1.1e-12 76.6 121 40.5
Lsat_1_v5_gn_5_160760 Lactuca sativa HOM05D000104 ORTHO05D005891 1.1e-12 76.6 103 45.6
Lalb_Chr25g0287091 Lupinus albus HOM05D000104 ORTHO05D005891 1.5e-12 76.3 123 39.8
Oeu017927.1 Olea europaea HOM05D000104 ORTHO05D005891 1.9e-12 75.9 54 70.4
Sp5g05300 Schrenkiella parvula HOM05D000104 ORTHO05D005891 1.9e-12 75.9 72 54.2
ECA248G3812 Erigeron canadensis HOM05D000104 ORTHO05D005891 2.5e-12 75.5 97 44.3
Lalb_Chr01g0017271 Lupinus albus HOM05D000104 ORTHO05D005891 2.5e-12 75.5 123 39.8
Peaxi162Scf00130g00834 Petunia axillaris HOM05D000104 ORTHO05D005891 2.5e-12 75.5 55 70.9
Aa31LG10G12170 Aethionema arabicum HOM05D000104 ORTHO05D005891 7.4e-12 73.9 119 41.2
arahy.Tifrunner.gnm1.ann1.JJI54I Arachis hypogaea HOM05D000104 ORTHO05D005891 9.7e-12 73.6 121 39.7
Sed0023310 Sechium edule HOM05D000104 ORTHO05D005891 9.7e-12 73.6 54 70.4
CAN.G1237.14 Capsicum annuum HOM05D000104 ORTHO05D005891 1.3e-11 73.2 55 67.3
Cc06_g18110 Coffea canephora HOM05D000104 ORTHO05D005891 1.3e-11 73.2 63 61.9
Nitab4.5_0000826g0080 Nicotiana tabacum HOM05D000104 ORTHO05D005891 1.3e-11 73.2 55 69.1
Nitab4.5_0001618g0170 Nicotiana tabacum HOM05D000104 ORTHO05D005891 1.3e-11 73.2 55 69.1
THA.LOC104801997 Tarenaya hassleriana HOM05D000104 ORTHO05D005891 1.3e-11 73.2 62 61.3
CARHR167500 Cardamine hirsuta HOM05D000104 ORTHO05D005891 1.6e-11 72.8 121 41.3
Medtr7g090960 Medicago truncatula HOM05D000104 ORTHO05D005891 1.6e-11 72.8 121 40.5
Actinidia09301 Actinidia chinensis HOM05D000104 ORTHO05D005891 2.8e-11 72.0 118 42.4
Thhalv10005740m.g Eutrema salsugineum HOM05D000104 ORTHO05D005891 2.8e-11 72.0 61 62.3
MSTRG.10809 Avicennia marina HOM05D000104 ORTHO05D005891 3.7e-11 71.6 52 69.2
HanXRQChr01g0009101 Helianthus annuus HOM05D000104 ORTHO05D005891 4.8e-11 71.2 55 61.8
A09p50220 Brassica napus HOM05D000104 ORTHO05D005891 6.3e-11 70.9 61 60.7
BraA09t40472Z Brassica rapa HOM05D000104 ORTHO05D005891 6.3e-11 70.9 61 60.7
Solyc04g016370.3 Solanum lycopersicum HOM05D000104 ORTHO05D005891 1.4e-10 69.7 54 66.7
Sopen04g008460 Solanum pennellii HOM05D000104 ORTHO05D005891 1.4e-10 69.7 54 66.7
Migut.K00102 Erythranthe guttata HOM05D000104 ORTHO05D005891 1.8e-10 69.3 50 72.0
C08p32710 Brassica napus HOM05D000104 ORTHO05D005891 2.4e-10 68.9 61 59.0
BolC8t50882H Brassica oleracea HOM05D000104 ORTHO05D005891 2.4e-10 68.9 61 59.0
HanXRQChr10g0292021 Helianthus annuus HOM05D000104 ORTHO05D005891 2.4e-10 68.9 54 59.3
Glyma.10G106500 Glycine max HOM05D000104 ORTHO05D005891 3.1e-10 68.6 61 60.7
A04p03200 Brassica napus HOM05D000104 ORTHO05D005891 9.0e-10 67.0 61 57.4
BraA04t16042Z Brassica rapa HOM05D000104 ORTHO05D005891 9.0e-10 67.0 61 57.4
SGA_v2.0_scaffold94G28495 Striga asiatica HOM05D000104 ORTHO05D005891 9.0e-10 67.0 59 62.7
Nitab4.5_0000636g0060 Nicotiana tabacum HOM05D000104 ORTHO05D049302 1.2e-09 66.6 55 63.6
SalBow1G3151 Salvia bowleyana HOM05D000104 ORTHO05D005891 1.5e-09 66.2 52 65.4
unitig_37.g12706 Utricularia gibba HOM05D000104 ORTHO05D005891 1.5e-09 66.2 57 63.2
CDE02G4214 Ceratophyllum demersum HOM05D000104 ORTHO05D005891 3.2e-07 58.5 107 36.4
Os03g0352500 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005891 7.2e-07 57.4 57 54.4
Zm00001eb394610 Zea mays HOM05D000104 ORTHO05D005891 7.9e-06 53.9 77 44.2


User provided reference genes

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