Gene: AT3G57300

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G57300
  • Transcript Identifier AT3G57300.1
  • Gene Type Coding gene
  • Location Chr3 : 21199612-21207635 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G57300.1
  • symbol INO80
  • Alias ATINO80,INO80 ORTHOLOG
  • full_name INO80 ortholog
  • uniprot Q8RXS6

Descriptions

  • Description DNA helicase INO80-like protein
  • Computational description INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1); Has 26461 Blast hits to 15529 proteins in 1767 species: Archae - 159; Bacteria - 7863; Metazoa - 5872; Fungi - 5586; Plants - 2348; Viruses - 196; Other Eukaryotes - 4437 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006338
IEA
GOA Databasechromatin remodeling
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0006338
IEA
InterProchromatin remodeling
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IBA
Gene OntologyDNA repair1
GO:0006281
IEA
InterProDNA repair
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0043618
IBA
Gene Ontologyregulation of transcription from RNA polymerase II promoter in response to stress1
GO:0006355
IMP
Gene Ontologyregulation of transcription, DNA-templated2
GO:0016444
IMP
Gene Ontologysomatic cell DNA recombination2
GO:0045739
IMP
Gene Ontologypositive regulation of DNA repair2
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem3
GO:1905168
IGI
Gene Ontologypositive regulation of double-strand break repair via homologous recombination3
GO:0042766
IBA
Gene Ontologynucleosome mobilization1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0016887
IBA
Gene OntologyATP hydrolysis activity1
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity
GO:0042393
IDA
IBA
Gene Ontologyhistone binding1 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031011
IEA
GOA DatabaseIno80 complex
GO:0031011
IBA
Gene OntologyIno80 complex1
GO:0031011
IEA
InterProIno80 complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000330 SNF2, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR031047 DNA helicase Ino80
IPR020838 DBINO domain
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.3.1 Chromatin organisation.nucleosome remodeling.INO80 chromatin remodeling complex.ATPase component Ino80