Gene: Sopen04g008460

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g008460
  • Transcript Identifier Sopen04g008460.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 7320869-7337692 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g008460.1

Descriptions

  • Description Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. | INO80 ortholog (INO80) | FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding | INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription | LOCATED IN: cellular_component unknown | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA binding domain, INO80 , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein ., Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice), SNF2-related
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006338
IEA
InterProchromatin remodeling
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0045739
ISO
PLAZA Integrative Orthologypositive regulation of DNA repair AT3G57300
GO:1905168
ISO
PLAZA Integrative Orthologypositive regulation of double-strand break repair via homologous recombination AT3G57300
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT3G57300
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT3G57300
GO:0016444
ISO
PLAZA Integrative Orthologysomatic cell DNA recombination AT3G57300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT3G57300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0031011
IEA
InterProIno80 complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR020838 DBINO domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR031047 DNA helicase Ino80
IPR001650 Helicase, C-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.3.1 Chromatin organisation.nucleosome remodeling.INO80 chromatin remodeling complex.ATPase component Ino80