Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 2060.0 1064 100.0
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1426.4 1026 72.9
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1362.4 1007 70.9
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1237.2 1024 63.5
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1223.8 1031 63.7
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1220.3 1093 61.2
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1215.7 957 69.6
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1210.3 1084 61.2
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1208.0 1029 62.0
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 0.0e+00 1204.5 1110 59.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1192.9 1028 61.2
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1183.3 1064 63.3
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1179.1 1132 59.1
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 0.0e+00 1174.8 1003 65.8
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1166.0 1105 59.2
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1164.8 1025 60.9
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1162.9 1064 60.8
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1157.5 1116 58.5
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 0.0e+00 1157.1 1163 56.3
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1152.5 1081 59.2
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1147.5 1074 60.7
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 0.0e+00 1145.6 1029 63.8
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1140.9 1028 59.6
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1140.6 1028 59.6
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1139.4 1081 59.1
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1139.4 1033 59.8
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1135.9 1028 59.3
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1134.4 1027 61.3
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1130.9 1064 58.7
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1130.2 1096 59.9
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1124.4 1097 56.5
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1124.0 1035 62.1
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1123.6 1104 56.6
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1123.2 1029 59.9
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 0.0e+00 1118.6 1024 60.1
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1115.9 1027 60.1
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 0.0e+00 1114.4 921 66.0
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 0.0e+00 1114.4 1165 56.3
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 0.0e+00 1111.7 1024 59.6
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1110.5 1104 56.8
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 0.0e+00 1109.7 1010 61.3
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1109.4 1035 61.1
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1108.2 1035 60.9
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1106.7 1032 60.0
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1104.4 1036 57.9
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1102.8 1061 58.3
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 0.0e+00 1101.7 1036 57.8
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 0.0e+00 1097.0 1084 58.3
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1094.7 1093 58.2
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1090.9 1025 59.3
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 0.0e+00 1084.7 1048 58.0
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1079.3 1030 57.5
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1077.0 1064 56.6
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 5.7e-307 1057.7 1026 58.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.3e-306 1056.6 1055 55.9
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 1.3e-306 1056.6 1037 59.8
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.5e-304 1048.1 1032 58.4
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 7.7e-304 1047.3 1027 57.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.1e-302 1043.5 1030 59.4
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 3.2e-302 1042.0 1028 57.9
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.1e-301 1039.3 1082 55.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.4e-300 1036.6 1036 55.4
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.0e-300 1035.0 1048 55.9
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 2.0e-299 1032.7 1017 57.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.7e-293 1012.3 1042 57.1
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 3.6e-293 1011.9 991 58.4
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.8e-292 1009.6 1042 55.5
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 8.8e-292 1007.3 1013 56.7
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 3.7e-290 1001.9 1056 54.8
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.4e-289 1000.0 1021 57.8
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.5e-286 989.9 1209 48.9
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.5e-286 989.2 783 67.8
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 4.0e-284 981.9 1024 55.4
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.2e-283 980.3 979 58.1
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 5.7e-283 978.0 1040 54.5
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 2.4e-281 972.6 1024 54.1
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.1e-278 963.8 1067 53.5
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.9e-278 963.0 1032 54.7
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.9e-278 963.0 1032 54.7
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.3e-276 956.1 1063 53.9
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 7.0e-273 944.5 1040 53.2
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 9.2e-273 944.1 1039 52.0
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.1e-270 937.2 1041 53.0
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.2e-269 933.7 1027 55.5
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 5.2e-268 928.3 1037 51.6
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.1e-265 920.6 1055 51.8
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.9e-265 919.8 829 60.8
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 7.0e-265 917.9 1051 52.0
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 5.8e-259 898.3 896 58.6
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 2.2e-258 896.3 1141 50.8
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 8.6e-255 884.4 1054 51.1
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 5.8e-251 871.7 1039 51.8
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 4.6e-248 862.1 1042 51.5
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 2.5e-246 856.3 1031 51.6
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 4.3e-246 855.5 1031 51.4
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 2.4e-244 849.7 886 58.4
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 8.4e-242 841.3 838 58.0
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 9.3e-241 837.8 1049 49.9
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 7.8e-240 834.7 1041 50.1
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 8.7e-239 831.2 1047 50.0
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.5e-238 830.5 1041 50.0
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 9.6e-238 827.8 709 63.3
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.0e-235 820.1 593 72.3
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 4.5e-235 818.9 956 50.2
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 6.4e-234 815.1 1049 48.5
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 6.4e-234 815.1 1049 48.5
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 3.2e-233 812.8 1045 50.1
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 5.1e-231 805.4 631 67.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 2.5e-222 776.5 834 54.2
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.3e-213 747.7 690 59.9
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 8.2e-213 745.0 833 50.7
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.8e-212 743.8 831 50.5
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.3e-199 700.3 838 49.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-195 686.4 525 69.5
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.0e-194 684.9 1069 46.1
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 9.4e-193 678.3 976 44.4
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.0e-191 674.9 863 47.7
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 9.1e-188 661.8 942 45.0
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 5.5e-169 599.4 429 71.3
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 8.6e-162 575.5 972 41.9
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.8e-151 541.2 365 74.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.3e-151 540.8 512 58.6
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 9.8e-150 535.4 1059 37.9
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 4.9e-149 533.1 826 44.1
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.1e-148 531.9 364 74.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 2.4e-127 461.1 726 44.5
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.8e-125 453.8 356 67.1
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 8.7e-122 442.6 348 68.4
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.6e-107 395.2 333 65.8
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 5.3e-103 380.2 536 44.8
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.5e-94 350.5 375 56.8
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.1e-91 341.7 467 46.5
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.7e-88 330.9 261 64.4
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.3e-79 300.4 553 41.4
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.3e-79 300.4 553 41.4
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.8e-74 285.4 257 59.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.1e-68 266.2 380 44.5
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 9.1e-63 246.5 437 41.0
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 9.1e-63 246.5 169 76.9
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 7.2e-60 236.9 301 45.2
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.4e-58 232.6 340 41.8
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.7e-54 218.4 157 72.6
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 5.9e-54 217.2 159 68.6
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 8.6e-53 213.4 270 51.5
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.4e-50 206.1 132 75.0
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.2e-48 198.7 530 37.4
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 3.2e-47 194.9 473 34.9
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 9.2e-47 193.4 617 28.2
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.2e-46 193.0 154 62.3
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.1e-43 182.2 151 66.9
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 5.2e-42 177.6 195 51.8
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 1.4e-39 169.5 136 69.1
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 3.2e-39 168.3 291 38.1
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 9.8e-33 146.7 138 54.3
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.7e-32 146.0 98 73.5
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 4.6e-30 137.9 104 63.5
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 6.8e-26 124.0 81 79.0
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 4.9e-24 117.9 82 73.2
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.2e-23 115.2 82 72.0
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 2.2e-16 92.4 67 64.2
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.1e-15 90.1 50 82.0
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 9.3e-15 87.0 50 78.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 9.3e-15 87.0 158 34.8
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 1.0e-13 83.6 124 40.3
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.3e-13 82.4 75 49.3
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 9.6e-12 77.0 110 46.4
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 4.0e-10 71.6 49 65.3
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 9.0e-10 70.5 44 70.5
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 5.4e-07 61.2 242 26.0
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 7.1e-07 60.8 59 47.5
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 1.6e-06 59.7 241 25.7
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 2.1e-06 59.3 281 26.0
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 3.5e-06 58.5 46 60.9
Psat1g185440 Pisum sativum HOM05D002494 ORTHO05D002673 4.6e-06 58.2 295 24.7
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 6.0e-06 57.8 281 24.9
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 7.9e-06 57.4 299 23.4


User provided reference genes

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