Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 3.9e-235 817.8 419 100.0
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 3.1e-163 578.9 402 74.1
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 3.5e-151 538.9 405 70.1
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.9e-149 533.1 408 69.6
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 5.8e-146 521.5 411 67.2
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 5.8e-146 521.5 393 68.7
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 4.9e-145 518.5 399 68.9
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 1.4e-144 516.9 411 68.1
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 5.4e-144 515.0 401 66.8
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.7e-142 510.0 357 70.6
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.0e-142 509.2 322 76.1
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 8.6e-142 507.7 399 66.7
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 1.1e-141 507.3 357 70.3
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.3e-141 505.4 343 72.6
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 9.6e-141 504.2 390 66.7
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 6.2e-140 501.5 317 77.9
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 8.1e-140 501.1 421 66.3
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 2.4e-139 499.6 324 76.5
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 2.4e-139 499.6 397 65.7
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 5.2e-139 498.4 463 60.3
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 5.8e-138 495.0 398 64.3
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.3e-137 493.8 325 74.5
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 3.8e-137 492.3 395 67.3
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 6.4e-137 491.5 327 74.0
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.4e-136 490.3 377 67.4
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.4e-136 490.3 325 73.5
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.4e-136 490.3 319 75.5
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.9e-136 490.0 325 74.2
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 7.1e-136 488.0 393 64.4
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 7.1e-136 488.0 407 64.9
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 1.6e-135 486.9 382 65.4
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 2.1e-135 486.5 398 65.3
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 4.6e-135 485.3 378 65.6
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 7.8e-135 484.6 406 62.1
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 7.8e-135 484.6 325 73.5
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 1.7e-134 483.4 404 64.9
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 1.1e-133 480.7 385 66.2
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.1e-133 480.7 390 64.6
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 1.1e-133 480.7 357 68.1
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 1.1e-133 480.7 366 68.3
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 1.9e-133 479.9 320 73.4
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 2.5e-133 479.6 325 72.9
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 3.3e-133 479.2 398 63.8
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 4.3e-133 478.8 408 63.5
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 5.6e-133 478.4 357 68.1
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 4.8e-132 475.3 328 72.6
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 8.1e-132 474.6 409 62.8
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.4e-131 473.8 398 62.6
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 4.5e-130 468.8 322 70.5
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 9.9e-130 467.6 303 75.6
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 1.3e-129 467.2 392 63.5
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.7e-129 466.8 397 61.5
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 1.7e-129 466.8 322 70.8
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 2.2e-129 466.5 402 62.4
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 2.2e-129 466.5 349 68.5
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 2.2e-129 466.5 432 59.0
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 4.9e-129 465.3 361 64.8
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 7.1e-128 461.5 312 70.8
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 6.0e-127 458.4 317 70.3
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 7.9e-127 458.0 321 72.0
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.0e-126 457.6 383 62.1
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 3.0e-126 456.1 395 62.0
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 8.7e-126 454.5 323 69.7
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 1.5e-125 453.8 305 72.8
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 1.9e-125 453.4 318 70.4
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 3.3e-125 452.6 324 69.8
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 4.3e-125 452.2 305 71.8
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 4.3e-125 452.2 325 67.4
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 7.4e-125 451.4 318 70.8
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 7.4e-125 451.4 306 72.5
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 1.6e-124 450.3 306 72.9
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 1.6e-124 450.3 325 69.2
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 1.4e-123 447.2 329 67.2
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 2.4e-123 446.4 305 71.1
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 6.9e-123 444.9 321 68.5
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 7.6e-122 441.4 368 63.0
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 2.9e-121 439.5 358 62.0
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 3.8e-121 439.1 380 60.5
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 4.9e-121 438.7 275 77.8
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 4.2e-120 435.6 380 59.7
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 3.5e-119 432.6 382 59.4
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 6.7e-118 428.3 375 61.9
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.9e-117 426.8 323 65.0
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.9e-117 426.8 323 65.0
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 4.5e-114 415.6 387 57.9
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 2.8e-108 396.4 340 63.2
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 4.8e-108 395.6 310 66.1
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.8e-107 393.7 386 54.9
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.3e-105 387.5 336 62.5
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 3.8e-105 386.0 309 60.8
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.4e-104 384.0 332 59.6
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 1.4e-104 384.0 383 53.3
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 5.5e-104 382.1 309 60.5
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 3.9e-102 375.9 394 54.1
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 1.3e-100 370.9 316 63.0
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 2.8e-100 369.8 322 57.5
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 1.4e-99 367.5 233 74.7
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 4.1e-99 365.9 311 58.5
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 6.3e-92 342.0 370 53.5
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 7.0e-83 312.0 180 83.3
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 1.0e-81 308.1 302 54.0
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 3.7e-76 289.7 171 81.3
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 5.3e-75 285.8 194 74.7
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 1.3e-73 281.2 171 77.8
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 5.0e-73 279.3 257 57.2
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 1.6e-71 274.2 365 42.7
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 5.7e-69 265.8 416 39.4
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.7e-65 254.2 170 74.7
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 1.6e-58 231.1 134 80.6
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 5.9e-58 229.2 254 53.9
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.4e-38 164.9 130 63.8
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 4.0e-30 136.7 97 67.0
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 7.8e-26 122.5 315 31.4
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.2e-18 98.6 57 84.2
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 6.0e-18 96.3 219 33.8
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 1.0e-17 95.5 51 80.4
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 8.4e-12 75.9 194 30.4
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.4e-11 75.1 155 31.0
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 1.3e-07 62.0 114 40.4
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 6.2e-07 59.7 74 44.6
vmacro16590 Vaccinium macrocarpon HOM05D007129 ORTHO05D008680 6.2e-07 59.7 116 37.9
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 8.1e-07 59.3 63 49.2
COL.COLO4_04322 Corchorus olitorius HOM05D002131 ORTHO05D008680 1.1e-06 58.9 115 34.8
Rhsim12G0161900 Rhododendron simsii HOM05D007129 ORTHO05D008680 1.4e-06 58.5 66 48.5
Sc12g0005690 Simmondsia chinensis HOM05D007129 ORTHO05D008680 1.4e-06 58.5 116 37.1
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 1.4e-06 58.5 84 41.7
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 1.4e-06 58.5 84 41.7
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 1.4e-06 58.5 84 41.7
BcaNung06176 Brassica carinata HOM05D007129 ORTHO05D008680 1.8e-06 58.2 100 42.0
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 1.8e-06 58.2 84 41.7
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 2.4e-06 57.8 84 41.7
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.4e-06 57.8 63 47.6
Actinidia34958 Actinidia chinensis HOM05D002131 ORTHO05D008680 3.1e-06 57.4 66 47.0
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 3.1e-06 57.4 48 60.4
CsaV3_1G008250 Cucumis sativus L. HOM05D007129 ORTHO05D008680 4.0e-06 57.0 51 54.9
Carub.0005s1394 Capsella rubella HOM05D007129 ORTHO05D008680 5.3e-06 56.6 55 49.1
Glyma.U031407 Glycine max HOM05D007129 ORTHO05D008680 5.3e-06 56.6 110 37.3
Oeu016337.1 Olea europaea HOM05D007129 ORTHO05D008680 5.3e-06 56.6 61 47.5
PRCOL_00005231 Prasinoderma coloniale HOM05D007129 ORTHO05D008680 5.3e-06 56.6 73 38.4
Hund02711 Selenicereus undatus HOM05D007129 ORTHO05D008680 5.3e-06 56.6 73 42.5
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 5.3e-06 56.6 66 43.9
CSS0035860 Camellia sinensis var. sinensis HOM05D007129 ORTHO05D008680 6.9e-06 56.2 66 47.0
Migut.D01914 Erythranthe guttata HOM05D007129 ORTHO05D008680 6.9e-06 56.2 63 50.8
PGR044G2359 Punica granatum HOM05D007129 ORTHO05D008680 6.9e-06 56.2 53 50.9
CARHR156520 Cardamine hirsuta HOM05D007129 ORTHO05D008680 9.0e-06 55.8 55 49.1
HanXRQChr09g0271771 Helianthus annuus HOM05D007129 ORTHO05D008680 9.0e-06 55.8 51 51.0
Hma1.2p1_1643F.1_g295180 Hydrangea macrophylla HOM05D007129 ORTHO05D008680 9.0e-06 55.8 51 51.0
MD06G1180800 Malus domestica HOM05D007129 ORTHO05D008680 9.0e-06 55.8 51 52.9
THA.LOC104821441 Tarenaya hassleriana HOM05D007129 ORTHO05D008680 9.0e-06 55.8 66 45.5
VMungo1215G0430 Vigna mungo HOM05D007129 ORTHO05D008680 9.0e-06 55.8 83 39.8


User provided reference genes

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