Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07562 Nelumbo nucifera HOM05D004977 ORTHO05D006454 8.6e-60 233.4 115 100.0
Nn6g34596 Nelumbo nucifera HOM05D004977 ORTHO05D006454 2.7e-45 185.3 139 72.7
PGR044G2329 Punica granatum HOM05D004977 ORTHO05D006454 7.1e-38 160.6 139 61.9
GSVIVG01037357001 Vitis vinifera HOM05D004977 ORTHO05D006454 3.5e-37 158.3 139 62.6
SalBow6G4955 Salvia bowleyana HOM05D004977 ORTHO05D006454 4.6e-37 157.9 139 61.9
Phvul.011G100500 Phaseolus vulgaris HOM05D004977 ORTHO05D006454 7.9e-37 157.1 139 60.4
VMungo1127G1403 Vigna mungo HOM05D004977 ORTHO05D006454 7.9e-37 157.1 139 60.4
Glyma.06G308700 Glycine max HOM05D004977 ORTHO05D006454 1.3e-36 156.4 139 61.2
Lj3g0003647 Lotus japonicus HOM05D004977 ORTHO05D006454 1.3e-36 156.4 139 60.4
Eucgr.J00591 Eucalyptus grandis HOM05D004977 ORTHO05D006454 1.8e-36 156.0 139 60.4
Glyma.12G096100 Glycine max HOM05D004977 ORTHO05D006454 1.8e-36 156.0 139 61.2
QL01p019084 Quercus lobata HOM05D004977 ORTHO05D006454 1.8e-36 156.0 139 61.9
TWI31G0709 Tripterygium wilfordii HOM05D004977 ORTHO05D006454 1.8e-36 156.0 139 61.2
Potri.001G213900 Populus trichocarpa HOM05D004977 ORTHO05D006454 2.3e-36 155.6 139 63.3
Haze_23597 Corylus avellana HOM05D004977 ORTHO05D006454 3.9e-36 154.8 139 61.2
Manes.04G055000 Manihot esculenta HOM05D004977 ORTHO05D006454 3.9e-36 154.8 139 61.2
TAR633G0771 Trochodendron aralioides HOM05D004977 ORTHO05D006454 3.9e-36 154.8 139 61.2
THA.LOC104810945 Tarenaya hassleriana HOM05D004977 ORTHO05D006454 8.7e-36 153.7 139 61.2
Aqoxy1G00589 Aquilegia oxysepala HOM05D004977 ORTHO05D006454 1.1e-35 153.3 139 59.7
Cc01_g07900 Coffea canephora HOM05D004977 ORTHO05D006454 1.1e-35 153.3 131 63.4
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 1.1e-35 153.3 139 60.4
CSS0048805 Camellia sinensis var. sinensis HOM05D004977 ORTHO05D006454 1.9e-35 152.5 131 62.6
Ca_19486_v3 Cicer arietinum L. HOM05D004977 ORTHO05D006454 2.5e-35 152.1 139 59.0
Prupe.8G068000 Prunus persica HOM05D004977 ORTHO05D006454 2.5e-35 152.1 139 59.7
TWI79G0798 Tripterygium wilfordii HOM05D004977 ORTHO05D006454 2.5e-35 152.1 139 59.7
Gohir.D04G019200 Gossypium hirsutum HOM05D004977 ORTHO05D006454 3.3e-35 151.8 139 60.4
Gorai.012G023000 Gossypium raimondii HOM05D004977 ORTHO05D006454 3.3e-35 151.8 139 60.4
MD05G1047200 Malus domestica HOM05D004977 ORTHO05D006454 3.3e-35 151.8 139 59.7
MD07G1072700 Malus domestica HOM05D004977 ORTHO05D006454 4.3e-35 151.4 139 58.3
Psat7g203480 Pisum sativum HOM05D004977 ORTHO05D006454 4.3e-35 151.4 139 59.0
Actinidia37640 Actinidia chinensis HOM05D004977 ORTHO05D006454 5.6e-35 151.0 130 63.1
MSTRG.21003 Avicennia marina HOM05D004977 ORTHO05D006454 5.6e-35 151.0 139 60.4
Gohir.A05G395800 Gossypium hirsutum HOM05D004977 ORTHO05D006454 5.6e-35 151.0 139 60.4
Medtr4g050180 Medicago truncatula HOM05D004977 ORTHO05D006454 5.6e-35 151.0 139 58.3
Sabra04G0149200 Salix brachista HOM05D004977 ORTHO05D006454 5.6e-35 151.0 139 61.9
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 5.6e-35 151.0 131 63.4
Atru.chr7.2568 Acer truncatum HOM05D004977 ORTHO05D006454 9.6e-35 150.2 139 60.4
ClCG02G022520 Citrullus lanatus HOM05D004977 ORTHO05D006454 1.3e-34 149.8 139 60.4
Thecc.10G121800 Theobroma cacao HOM05D004977 ORTHO05D006454 1.3e-34 149.8 139 59.7
arahy.Tifrunner.gnm1.ann1.7R5ZBL Arachis hypogaea HOM05D004977 ORTHO05D006454 1.6e-34 149.4 135 58.5
Lalb_Chr01g0005801 Lupinus albus HOM05D004977 ORTHO05D006454 1.6e-34 149.4 139 58.3
TPR.G4657 Trifolium pratense HOM05D004977 ORTHO05D006454 1.6e-34 149.4 138 58.7
arahy.Tifrunner.gnm1.ann1.78MUYP Arachis hypogaea HOM05D004977 ORTHO05D006454 2.1e-34 149.1 134 59.0
MSTRG.21010 Avicennia marina HOM05D004977 ORTHO05D006454 3.7e-34 148.3 139 59.0
CiPaw.13G126500 Carya illinoinensis HOM05D004977 ORTHO05D006454 3.7e-34 148.3 139 59.0
Migut.D02375 Erythranthe guttata HOM05D004977 ORTHO05D006454 3.7e-34 148.3 131 63.4
Duzib114G0826 Durio zibethinus HOM05D004977 ORTHO05D006454 4.8e-34 147.9 139 59.7
FvH4_3g28250 Fragaria vesca HOM05D004977 ORTHO05D006454 4.8e-34 147.9 139 57.6
PSO339G5000 Papaver somniferum HOM05D004977 ORTHO05D006454 4.8e-34 147.9 139 58.3
PSO384G3330 Papaver somniferum HOM05D004977 ORTHO05D006454 4.8e-34 147.9 139 58.3
RcHm_v2.0_Chr5g0051061 Rosa chinensis HOM05D004977 ORTHO05D006454 8.1e-34 147.1 139 59.7
Sed0002287 Sechium edule HOM05D004977 ORTHO05D006454 8.1e-34 147.1 139 60.4
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 8.1e-34 147.1 139 59.0
MD02G1244400 Malus domestica HOM05D004977 ORTHO05D006454 1.1e-33 146.7 143 56.6
Os11g0572100 Oryza sativa ssp. japonica HOM05D004977 ORTHO05D006454 1.1e-33 146.7 139 56.1
MELO3C014528.2 Cucumis melo HOM05D004977 ORTHO05D006454 1.4e-33 146.4 139 59.7
Migut.D02372 Erythranthe guttata HOM05D004977 ORTHO05D006454 1.4e-33 146.4 131 62.6
FAN21G3176 Fragaria x ananassa HOM05D004977 ORTHO05D006454 1.8e-33 146.0 139 57.6
Zm00001eb114240 Zea mays HOM05D004977 ORTHO05D006454 2.4e-33 145.6 139 54.7
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 4.0e-33 144.8 131 57.3
Sc11g0002670 Simmondsia chinensis HOM05D004977 ORTHO05D006454 4.0e-33 144.8 131 61.1
Actinidia04910 Actinidia chinensis HOM05D004977 ORTHO05D006454 6.9e-33 144.1 130 61.5
CsaV3_6G038660 Cucumis sativus L. HOM05D004977 ORTHO05D006454 6.9e-33 144.1 139 59.0
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 6.9e-33 144.1 131 57.3
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 1.2e-32 143.3 139 58.3
Lsat_1_v5_gn_4_27921 Lactuca sativa HOM05D004977 ORTHO05D006454 1.2e-32 143.3 139 56.8
Dinv18862 Davidia involucrata HOM05D004977 ORTHO05D006454 2.0e-32 142.5 125 62.4
EL10Ac6g14670 Beta vulgaris HOM05D004977 ORTHO05D006454 2.6e-32 142.1 131 58.8
CANSAT25G3123 Cannabis sativa HOM05D004977 ORTHO05D006454 3.4e-32 141.7 141 55.3
Oeu058189.1 Olea europaea HOM05D004977 ORTHO05D006454 3.4e-32 141.7 139 58.3
vmacro14315 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 3.4e-32 141.7 130 61.5
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 5.8e-32 141.0 139 55.4
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 7.6e-32 140.6 131 55.7
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 7.6e-32 140.6 131 55.7
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.3e-31 139.8 131 56.5
ECA234G1388 Erigeron canadensis HOM05D004977 ORTHO05D006454 1.7e-31 139.4 139 55.4
Lj2C831G4 Lonicera japonica HOM05D004977 ORTHO05D006454 2.9e-31 138.7 139 56.8
BcaC03g13854 Brassica carinata HOM05D004977 ORTHO05D006454 3.8e-31 138.3 139 57.6
Dinv21728 Davidia involucrata HOM05D004977 ORTHO05D006454 3.8e-31 138.3 141 56.7
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 3.8e-31 138.3 139 55.4
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 4.9e-31 137.9 131 55.0
Sp6g23180 Schrenkiella parvula HOM05D004977 ORTHO05D006454 4.9e-31 137.9 139 58.3
BcaB05g22754 Brassica carinata HOM05D004977 ORTHO05D006454 6.5e-31 137.5 139 57.6
Ah.02g126700 Amaranthus hybridus HOM05D004977 ORTHO05D006454 8.4e-31 137.1 128 57.8
AT5G22010 Arabidopsis thaliana HOM05D004977 ORTHO05D006454 8.4e-31 137.1 139 57.6
DCAR_018210 Daucus carota HOM05D004977 ORTHO05D006454 1.1e-30 136.7 156 51.3
Carub.0006s1965 Capsella rubella HOM05D004977 ORTHO05D006454 1.4e-30 136.3 139 57.6
CARHR191520 Cardamine hirsuta HOM05D004977 ORTHO05D006454 1.4e-30 136.3 139 58.3
Thhalv10012587m.g Eutrema salsugineum HOM05D004977 ORTHO05D006454 3.2e-30 135.2 139 56.1
unitig_699.g19732 Utricularia gibba HOM05D004977 ORTHO05D006454 4.2e-30 134.8 139 54.7
AL6G32970 Arabidopsis lyrata HOM05D004977 ORTHO05D006454 5.5e-30 134.4 139 56.8
MSTRG.21004 Avicennia marina HOM05D004977 ORTHO05D006454 5.5e-30 134.4 94 73.4
BcaC07g41303 Brassica carinata HOM05D004977 ORTHO05D006454 5.5e-30 134.4 139 56.1
Ciclev10027762m.g Citrus clementina HOM05D004977 ORTHO05D006454 7.1e-30 134.0 139 55.4
BolC2t07133H Brassica oleracea HOM05D004977 ORTHO05D006454 9.3e-30 133.7 134 57.5
AUR62007869 Chenopodium quinoa HOM05D004977 ORTHO05D006454 9.3e-30 133.7 111 64.0
BolC8t51866H Brassica oleracea HOM05D004977 ORTHO05D006454 1.2e-29 133.3 134 57.5
BNapus_Darmor_BZH_scaffold_38p00910 Brassica napus HOM05D004977 ORTHO05D006454 2.1e-29 132.5 134 56.7
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 2.1e-29 132.5 134 56.7
AUR62003055 Chenopodium quinoa HOM05D004977 ORTHO05D006454 2.1e-29 132.5 111 64.0
FAN16G1264 Fragaria x ananassa HOM05D004977 ORTHO05D006454 2.7e-29 132.1 159 49.7
vmacro04053 Vaccinium macrocarpon HOM05D004977 ORTHO05D006454 7.9e-29 130.6 98 68.4
C08p43100 Brassica napus HOM05D004977 ORTHO05D006454 1.3e-28 129.8 134 56.0
FAN25G0235 Fragaria x ananassa HOM05D004977 ORTHO05D006454 3.9e-28 128.3 94 67.0
QL01p019105 Quercus lobata HOM05D004977 ORTHO05D006454 3.9e-28 128.3 139 54.7
FAN11G1922 Fragaria x ananassa HOM05D004977 ORTHO05D006454 1.5e-27 126.3 94 66.0
SMO358G0615 Selaginella moellendorffii HOM05D004977 ORTHO05D006454 2.5e-27 125.6 130 52.3
CAN.G1271.15 Capsicum annuum HOM05D004977 ORTHO05D006454 1.3e-26 123.2 128 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4379 Anthoceros agrestis HOM05D004977 ORTHO05D006454 1.6e-26 122.9 139 48.9
ATR0697G081 Amborella trichopoda HOM05D004977 ORTHO05D006454 2.1e-26 122.5 76 76.3
Cpa.g.sc103.53 Carica papaya HOM05D004977 ORTHO05D006454 1.4e-25 119.8 76 76.3
COL.COLO4_16322 Corchorus olitorius HOM05D004977 ORTHO05D006454 1.0e-23 113.6 114 55.3
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 6.5e-23 110.9 130 48.5
Mapoly0030s0061 Marchantia polymorpha HOM05D004977 ORTHO05D006454 1.6e-21 106.3 130 46.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.3e-20 103.2 127 42.5
Hund25154 Selenicereus undatus HOM05D004977 ORTHO05D006454 1.8e-20 102.8 105 56.2
CBR_g36402 Chara braunii HOM05D004977 ORTHO05D006454 5.1e-20 101.3 127 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1947 Anthoceros agrestis HOM05D004977 ORTHO05D006454 3.0e-12 75.5 74 48.6
MCO16G356 Micromonas commoda HOM05D004977 ORTHO05D006454 1.4e-09 66.6 133 31.6
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 7.7e-08 60.8 69 37.7
PRCOL_00006813 Prasinoderma coloniale HOM05D004977 ORTHO05D006454 7.2e-06 54.3 69 37.7


User provided reference genes

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