Gene: BraA02t05635Z
General Information
Structural Information
- Species Brassica rapa
- Gene Identifier BraA02t05635Z
- Transcript Identifier BraA02t05635Z
- Gene Type Coding gene
- Location A02 : 4475835-4489476 : negative
Gene Family Information
- ID HOM05D004977
- #Genes/#Species 149/95
- Phylogenetic origin
- ID ORTHO05D006454
- #Genes/#Species 142/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- uniprot A0A3P6A0Y1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000003 | ISO | PLAZA Integrative Orthology | reproduction | AT5G22010 |
| GO:0006974 | ISO | PLAZA Integrative Orthology | cellular response to DNA damage stimulus | AT5G22010 |
| GO:0000712 | ISO | PLAZA Integrative Orthology | resolution of meiotic recombination intermediates | AT5G22010 |
| GO:0051570 | ISO | PLAZA Integrative Orthology | regulation of histone H3-K9 methylation | AT5G22010 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT5G22010 |
| GO:0051321 | ISO | PLAZA Integrative Orthology | meiotic cell cycle | AT5G22010 |
| GO:0031935 | ISO | PLAZA Integrative Orthology | regulation of chromatin silencing | AT5G22010 |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0006260 | IEA | InterPro | DNA replication |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003689 | IEA | GOA Database | DNA clamp loader activity | |
| GO:0003689 | IEA | InterPro | DNA clamp loader activity | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005663 | IEA | GOA Database | DNA replication factor C complex | |
| GO:0005663 | IEA | InterPro | DNA replication factor C complex | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001623 | DnaJ domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR003959 | ATPase, AAA-type, core |
| IPR008921 | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
| IPR003593 | AAA+ ATPase domain |
| IPR013725 | DNA replication factor RFC1, C-terminal |
| IPR036420 | BRCT domain superfamily |
| IPR001357 | BRCT domain |
| IPR036869 | Chaperone J-domain superfamily |
| IPR012178 | Replication factor C subunit 1 |
| Mapman id | Description |
|---|---|
| 13.2.3.4.2.1 | Cell cycle organisation.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.component RFC1 |
| 16.2.1.2.7 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SPF31) |