Gene: Sopen07g001990

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g001990
  • Transcript Identifier Sopen07g001990.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 944694-957265 : negative

Gene Family Information

  • ID HOM05D004977
  • #Genes/#Species 149/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g001990.1

Descriptions

  • Description replication factor C1 (RFC1) | FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding | INVOLVED IN: DNA replication | LOCATED IN: DNA replication factor C complex, intracellular | CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal , ATPase, AAA type, core , ATPase, AAA-type, core , DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal , DNA replication factor C, large subunit , BRCT | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006260
IEA
InterProDNA replication
GO:0006281
IEA
InterProDNA repair
GO:0031935
ISO
PLAZA Integrative Orthologyregulation of chromatin silencing AT5G22010
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT5G22010
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G22010
GO:0051570
ISO
PLAZA Integrative Orthologyregulation of histone H3-K9 methylation AT5G22010
GO:0000712
ISO
PLAZA Integrative Orthologyresolution of meiotic recombination intermediates AT5G22010
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT5G22010
GO:0000003
ISO
PLAZA Integrative Orthologyreproduction AT5G22010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003689
IEA
InterProDNA clamp loader activity
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005663
IEA
InterProDNA replication factor C complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
IPR013725 DNA replication factor RFC1, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036420 BRCT domain superfamily
IPR003593 AAA+ ATPase domain
IPR012178 Replication factor C subunit 1
IPR003959 ATPase, AAA-type, core
IPR001357 BRCT domain
Mapman id Description
13.2.3.4.2.1 Cell cycle organisation.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.component RFC1