Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1468.8 736 100.0
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1163.3 737 76.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 0.0e+00 1140.6 678 81.0
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1133.6 621 84.9
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1125.2 620 84.5
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1115.9 618 83.3
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1108.2 679 77.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1106.3 696 76.4
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1101.7 661 78.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1101.3 656 78.7
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1100.1 656 78.7
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1097.8 711 75.1
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1096.3 650 78.9
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1091.6 679 77.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1087.0 667 77.2
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1086.2 667 77.4
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1084.7 659 78.1
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 0.0e+00 1084.3 644 80.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1083.6 667 76.9
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1080.5 675 76.9
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1076.6 678 76.8
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 5.0e-312 1073.9 619 80.9
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 2.0e-311 1072.0 696 74.3
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 3.2e-309 1064.7 689 74.5
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.1e-308 1062.0 638 77.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.7e-308 1061.6 668 76.2
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.0e-307 1059.7 616 81.2
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.4e-307 1059.3 617 79.9
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.5e-306 1055.8 692 74.1
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.8e-304 1048.9 628 78.8
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.1e-304 1047.7 708 71.8
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 7.0e-304 1047.0 642 77.1
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.5e-303 1045.8 645 75.3
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.0e-302 1043.1 676 72.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.3e-302 1042.7 646 74.9
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.2e-302 1042.0 677 73.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.1e-301 1039.6 615 79.5
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 2.1e-300 1035.4 655 74.5
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.8e-299 1032.3 662 73.3
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.2e-299 1030.8 716 70.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.1e-298 1029.6 678 71.4
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.0e-298 1028.9 620 78.5
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 4.4e-298 1027.7 682 72.7
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 9.7e-298 1026.5 688 72.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.9e-293 1012.3 641 73.8
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.6e-292 1009.2 684 73.0
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.1e-292 1008.8 644 72.8
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 8.0e-292 1006.9 621 74.4
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 8.0e-292 1006.9 663 76.0
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 5.2e-291 1004.2 616 77.1
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 6.8e-291 1003.8 628 73.6
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.5e-290 1002.7 703 70.1
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.6e-290 1001.9 658 72.9
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 7.5e-290 1000.3 684 71.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 9.8e-290 1000.0 626 76.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.8e-289 998.4 658 72.6
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 3.7e-289 998.0 664 69.9
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.3e-286 989.6 626 76.2
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 4.7e-284 981.1 675 69.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 9.8e-282 973.4 706 68.1
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.8e-281 971.8 564 80.7
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.3e-281 970.7 664 68.2
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.1e-280 968.4 655 71.5
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 3.1e-280 968.4 655 71.6
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 4.1e-280 968.0 619 74.2
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 5.4e-280 967.6 619 74.3
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-279 964.9 626 72.5
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-279 964.9 626 72.5
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.5e-279 964.9 626 72.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 7.7e-279 963.8 596 79.4
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.9e-278 961.8 626 71.9
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 6.6e-278 960.7 622 72.5
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 6.6e-278 960.7 676 68.8
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-277 959.9 647 71.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.5e-277 959.5 619 72.5
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.3e-277 958.4 618 72.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 4.2e-277 958.0 684 67.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.8e-276 955.3 674 68.4
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 3.6e-276 954.9 677 66.2
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 8.0e-276 953.7 660 69.1
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.4e-275 953.0 626 71.2
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 4.0e-275 951.4 626 71.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.8e-275 950.7 660 69.1
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 6.8e-275 950.7 626 71.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.5e-274 949.5 626 71.7
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.2e-273 945.7 602 74.9
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.9e-273 945.3 688 67.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.9e-273 945.3 539 81.4
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 4.1e-272 941.4 617 71.6
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 7.0e-272 940.6 626 70.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 4.6e-271 937.9 626 72.7
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 6.6e-270 934.1 643 69.2
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.8e-268 928.7 623 71.3
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.6e-268 928.3 678 65.3
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.1e-264 916.8 709 65.3
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.5e-261 905.6 657 67.4
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 5.2e-259 897.9 650 69.1
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.9e-254 881.7 742 60.2
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 8.6e-254 880.6 682 64.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 5.4e-248 861.3 642 65.1
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.5e-245 853.2 642 62.5
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.6e-244 849.7 658 63.4
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.9e-243 844.0 657 61.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-240 836.6 683 62.1
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 4.6e-239 831.6 662 59.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.5e-237 826.6 653 63.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.3e-237 825.1 662 62.4
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.4e-235 819.3 668 61.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.3e-230 802.7 754 56.9
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.5e-229 800.0 620 61.8
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 4.0e-227 792.0 693 57.3
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 7.1e-224 781.2 709 58.7
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.5e-221 773.5 678 60.5
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.5e-221 772.7 553 66.9
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.3e-206 723.8 768 54.2
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 5.7e-205 718.4 575 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 8.2e-204 714.5 565 61.1
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 7.2e-200 701.4 653 56.2
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.2e-199 700.7 432 76.6
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-195 687.2 561 61.0
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.5e-194 683.7 472 71.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.0e-193 678.7 661 54.0
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.6e-191 672.5 493 67.5
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.1e-187 659.1 424 71.0
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.9e-186 655.2 424 71.5
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.5e-184 650.6 470 67.4
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 3.2e-184 649.4 433 73.2
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.2e-178 630.9 435 69.0
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.6e-178 630.6 495 63.8
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 4.8e-172 609.0 687 47.6
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.1e-155 552.7 714 42.2
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 5.0e-153 545.8 490 58.0
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.4e-141 506.1 634 41.5
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.4e-140 502.3 496 54.0
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.1e-131 474.9 663 40.1
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 2.7e-130 470.3 619 40.4
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.2e-126 456.1 318 67.3
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.0e-113 415.2 434 50.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.3e-103 381.7 226 80.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.9e-99 367.9 188 89.9
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.3e-95 355.1 182 90.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.7e-95 353.6 191 82.7
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.7e-90 337.4 168 92.3
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.4e-81 308.5 185 76.2
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.1e-81 306.6 185 75.1
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 5.7e-80 303.1 192 71.4
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 4.7e-74 283.5 185 70.8
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 5.7e-72 276.6 155 78.7
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 7.7e-69 266.2 169 75.7
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.2e-68 264.6 135 85.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 6.1e-58 229.9 175 65.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 8.3e-55 219.5 150 67.3
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.5e-51 206.1 102 86.3
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.0e-45 188.3 108 85.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-42 178.7 113 75.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.8e-42 177.9 84 92.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 3.4e-40 171.0 111 73.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.9e-30 138.7 79 78.5
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-27 128.3 115 51.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 4.3e-27 127.5 72 80.6
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.6e-26 125.6 75 74.7
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 2.8e-26 124.8 85 68.2
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 8.3e-23 113.2 85 61.2
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.4e-22 112.5 144 44.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.0e-13 80.5 50 68.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 6.0e-13 80.5 51 72.5
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 3.3e-11 74.7 44 75.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 2.1e-10 72.0 44 75.0
Os09g0298400 Oryza sativa ssp. japonica HOM05D005961 ORTHO05D007391 6.4e-07 60.5 302 22.2
Lsat_1_v5_gn_1_13520 Lactuca sativa HOM05D004736 ORTHO05D006424 2.4e-06 58.5 133 25.6
Sed0016673 Sechium edule HOM05D000645 ORTHO05D000494 3.2e-06 58.2 291 23.0
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 4.2e-06 57.8 263 24.3
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 5.4e-06 57.4 115 28.7
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 5.4e-06 57.4 62 50.0
CANSAT11G0752 Cannabis sativa HOM05D005961 ORTHO05D007391 7.1e-06 57.0 310 21.6


User provided reference genes

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