Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 1.5e-243 846.3 606 100.0
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 4.8e-141 505.8 579 72.7
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.2e-131 474.6 569 56.6
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 5.6e-126 455.7 556 66.9
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.9e-114 416.8 558 62.0
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 4.2e-113 412.9 530 57.5
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 3.5e-112 409.8 572 67.3
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 6.1e-112 409.1 552 67.8
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 8.2e-109 398.7 553 59.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.4e-108 397.9 541 60.6
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.5e-107 394.4 558 52.7
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 5.9e-107 392.5 558 64.2
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 2.9e-106 390.2 580 62.4
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.0e-103 381.7 547 59.0
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 8.8e-103 378.6 549 64.5
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 4.8e-101 372.9 615 58.9
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.8e-100 370.9 495 64.0
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 2.4e-100 370.5 525 54.3
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 5.3e-100 369.4 472 72.0
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 9.1e-100 368.6 550 66.4
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 2.6e-99 367.1 545 59.4
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 4.5e-99 366.3 558 60.0
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.3e-98 364.8 551 66.1
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 8.5e-98 362.1 536 51.7
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 8.5e-98 362.1 502 59.8
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.5e-97 360.5 552 56.7
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.5e-97 359.4 544 57.7
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.5e-97 359.4 502 63.7
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 9.4e-97 358.6 548 58.4
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 4.7e-96 356.3 486 61.5
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 1.7e-93 347.8 583 61.4
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.2e-93 347.4 571 54.3
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 3.7e-93 346.7 594 49.5
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 4.8e-93 346.3 534 57.1
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 4.1e-92 343.2 490 59.6
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 2.6e-91 340.5 500 68.6
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 3.5e-91 340.1 548 60.8
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 7.7e-91 339.0 543 63.7
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 3.8e-90 336.7 487 61.4
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 6.5e-90 335.9 542 60.5
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.5e-89 334.7 470 53.2
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.9e-89 334.3 571 60.6
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.5e-89 334.0 478 70.1
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 8.0e-88 328.9 549 63.4
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.4e-87 328.2 548 61.9
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.8e-87 327.8 469 71.9
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.8e-87 327.8 529 59.5
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 4.0e-87 326.6 549 63.4
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 6.7e-87 325.9 628 42.5
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 4.4e-86 323.2 538 64.7
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-85 321.6 491 64.2
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.7e-85 321.2 455 66.6
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.7e-85 321.2 491 61.9
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 8.2e-85 318.9 491 64.0
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 8.2e-85 318.9 478 70.3
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 1.4e-84 318.2 471 70.5
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.4e-84 318.2 471 70.5
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.8e-84 317.8 469 71.4
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.8e-84 317.8 484 69.6
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.0e-83 314.3 536 42.2
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 7.7e-83 312.4 542 46.3
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 7.7e-83 312.4 548 55.5
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.3e-82 311.6 452 61.3
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.3e-82 311.6 563 44.9
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.7e-82 311.2 506 61.9
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 1.1e-81 308.5 542 45.9
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.5e-81 308.1 552 62.7
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 9.4e-81 305.4 539 55.7
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.6e-80 303.5 472 47.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 6.1e-80 302.8 506 50.2
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 8.0e-80 302.4 464 70.7
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 6.8e-79 299.3 471 67.3
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 6.8e-79 299.3 508 62.2
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.5e-78 298.1 469 58.8
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 2.0e-78 297.7 551 60.1
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.0e-78 297.7 472 49.8
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 2.0e-78 297.7 511 48.7
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 3.4e-78 297.0 556 59.2
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 3.1e-76 290.4 551 58.6
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 3.1e-76 290.4 425 63.3
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 7.0e-76 289.3 485 56.9
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 7.0e-76 289.3 473 40.8
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 4.5e-75 286.6 576 55.2
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 4.5e-75 286.6 475 48.8
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.9e-74 283.9 505 55.6
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 3.8e-74 283.5 538 53.0
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.1e-73 282.0 552 51.6
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 4.4e-70 270.0 411 55.0
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 4.4e-70 270.0 515 56.5
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.7e-69 268.1 473 47.1
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 2.2e-69 267.7 548 56.2
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 7.0e-68 262.7 476 59.7
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 3.5e-67 260.4 474 55.1
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 2.5e-65 254.2 491 41.5
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.8e-63 248.1 497 39.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 7.5e-62 242.7 446 61.7
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.7e-61 241.5 406 46.8
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 3.2e-60 237.3 344 60.5
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 6.6e-58 229.6 533 34.7
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.6e-56 224.9 518 33.2
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 6.0e-51 206.5 427 46.8
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.8e-48 197.6 282 62.4
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 3.6e-48 197.2 201 52.7
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.8e-47 194.9 132 75.0
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 3.9e-42 177.2 199 48.7
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.9e-41 174.9 211 47.4
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.1e-36 159.1 321 51.7
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 6.2e-32 143.3 84 78.6
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 2.2e-29 134.8 120 55.8
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.8e-29 134.0 317 34.4
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 4.2e-28 130.6 155 47.1
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 2.8e-24 117.9 205 37.1
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 1.1e-23 115.9 203 58.1
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.0e-23 114.0 318 51.6
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 5.3e-23 113.6 90 60.0
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.6e-22 111.3 206 35.4
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 8.4e-21 106.3 462 27.7
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 1.3e-18 99.0 84 60.7
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.5e-17 95.5 85 56.5
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.4e-17 93.2 141 34.0
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.0e-15 87.4 141 34.8
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 1.5e-14 85.5 73 61.6
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.4e-14 84.3 210 29.0
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 4.5e-14 84.0 150 36.7
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.6e-11 75.5 60 61.7
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 3.5e-11 74.3 115 36.5
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 4.6e-11 73.9 54 61.1
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 5.1e-10 70.5 50 66.0
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.1e-08 65.1 92 42.4
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 6.2e-08 63.5 41 68.3
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 1.1e-07 62.8 38 73.7


User provided reference genes

Program Settings