Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.3e-88 329.7 171 100.0
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 2.2e-83 312.4 162 98.8
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 4.1e-50 201.8 162 63.0
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.7e-43 179.9 159 54.7
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.4e-42 176.0 156 57.1
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 9.3e-42 174.1 152 57.9
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 6.6e-40 167.9 160 55.0
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 1.6e-38 163.3 160 55.6
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 4.8e-38 161.8 160 53.1
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 9.9e-36 154.1 165 55.2
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 2.9e-35 152.5 149 54.4
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 2.9e-35 152.5 160 51.9
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 9.3e-34 147.5 126 58.7
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 9.3e-34 147.5 126 58.7
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 1.0e-32 144.1 149 51.0
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 2.3e-32 142.9 160 48.1
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 3.9e-32 142.1 130 51.5
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 5.1e-32 141.7 154 53.2
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 1.1e-31 140.6 150 48.7
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 1.5e-31 140.2 113 58.4
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 4.3e-31 138.7 160 48.8
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 7.3e-31 137.9 162 43.8
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 7.3e-31 137.9 160 46.2
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 7.3e-31 137.9 128 50.0
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 9.6e-31 137.5 162 51.2
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 9.6e-31 137.5 158 46.2
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 9.6e-31 137.5 128 52.3
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 9.6e-31 137.5 141 52.5
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 1.3e-30 137.1 148 46.6
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 2.1e-30 136.3 159 43.4
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 2.1e-30 136.3 136 47.8
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 2.8e-30 136.0 141 51.8
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 3.6e-30 135.6 152 49.3
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 6.2e-30 134.8 156 48.7
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 6.2e-30 134.8 126 53.2
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 6.2e-30 134.8 152 44.7
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 8.1e-30 134.4 118 55.9
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 8.1e-30 134.4 156 44.9
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 1.4e-29 133.7 148 48.0
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 3.1e-29 132.5 147 48.3
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 3.1e-29 132.5 109 56.9
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 4.0e-29 132.1 159 45.9
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 6.9e-29 131.3 145 45.5
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 9.0e-29 131.0 154 46.8
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 9.0e-29 131.0 118 55.1
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 1.2e-28 130.6 106 54.7
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 1.5e-28 130.2 155 45.8
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 1.5e-28 130.2 156 43.6
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 2.6e-28 129.4 147 48.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 3.4e-28 129.0 164 48.2
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 7.6e-28 127.9 110 57.3
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 7.6e-28 127.9 143 45.5
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 7.6e-28 127.9 109 56.0
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 4.9e-27 125.2 146 48.6
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 1.1e-26 124.0 156 44.9
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.4e-26 122.9 146 46.6
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 3.2e-26 122.5 110 54.5
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 3.2e-26 122.5 146 45.2
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 1.2e-25 120.6 146 46.6
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.6e-25 120.2 140 47.9
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 2.1e-25 119.8 140 42.1
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 2.7e-25 119.4 146 42.5
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 4.6e-25 118.6 154 42.9
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 6.0e-25 118.2 140 41.4
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 7.9e-25 117.9 103 53.4
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 7.9e-25 117.9 147 46.3
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 7.9e-25 117.9 145 42.1
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 1.8e-24 116.7 163 40.5
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.8e-24 116.7 156 40.4
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 3.0e-24 115.9 167 43.1
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 3.0e-24 115.9 112 50.0
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 3.9e-24 115.5 140 40.0
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 3.9e-24 115.5 137 41.6
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 5.1e-24 115.2 145 41.4
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 6.7e-24 114.8 122 45.9
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 8.7e-24 114.4 149 40.3
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.1e-23 114.0 149 40.3
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.5e-23 113.6 137 46.7
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 3.3e-23 112.5 139 44.6
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 5.6e-23 111.7 135 40.7
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 7.4e-23 111.3 135 43.0
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 7.4e-23 111.3 138 42.0
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 9.6e-23 110.9 104 53.8
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 2.8e-22 109.4 126 41.3
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 2.8e-22 109.4 139 43.2
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 2.8e-22 109.4 167 38.9
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 3.7e-22 109.0 107 53.3
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 1.1e-21 107.5 112 48.2
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 1.1e-21 107.5 136 41.2
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 1.1e-21 107.5 134 43.3
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 4.0e-21 105.5 136 39.7
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 6.9e-21 104.8 104 50.0
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 2.6e-20 102.8 85 60.0
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 8.7e-16 87.8 80 48.8
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 2.1e-14 83.2 58 67.2
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 2.2e-11 73.2 127 36.2
DCAR_001582 Daucus carota HOM05D006350 ORTHO05D007850 1.2e-09 67.4 105 38.1
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 4.6e-09 65.5 111 32.4
TAR628G0496 Trochodendron aralioides HOM05D000760 ORTHO05D000618 3.7e-06 55.8 42 64.3
TAR633G2230 Trochodendron aralioides HOM05D000760 ORTHO05D000618 4.8e-06 55.5 42 66.7


User provided reference genes

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