Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 9.4e-303 1042.7 527 100.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.4e-282 974.9 499 99.6
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 2.5e-199 699.1 506 70.0
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 1.8e-189 666.4 517 66.7
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 2.4e-189 666.0 501 68.1
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 1.1e-183 647.1 513 65.7
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.6e-180 636.0 505 64.6
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 3.5e-180 635.6 506 64.4
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 7.7e-180 634.4 537 62.8
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 2.7e-177 625.9 506 64.6
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 1.0e-176 624.0 506 65.2
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 5.2e-176 621.7 507 63.5
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.2e-175 620.5 506 63.8
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 9.7e-175 617.5 506 63.6
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 9.7e-175 617.5 507 64.1
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 8.3e-174 614.4 507 63.9
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.4e-173 613.6 506 64.2
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 5.3e-173 611.7 506 64.6
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 1.2e-172 610.5 526 61.6
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.6e-172 610.1 509 64.8
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 1.6e-172 610.1 507 62.3
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 2.0e-172 609.8 507 63.5
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 4.5e-172 608.6 507 63.3
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 1.3e-171 607.1 509 61.9
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 1.1e-170 604.0 508 62.8
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 7.2e-170 601.3 523 61.2
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.6e-169 600.1 508 61.2
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.7e-169 599.4 508 61.2
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.3e-168 596.3 508 60.8
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 5.2e-168 595.1 508 61.4
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.2e-167 594.0 511 60.9
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 4.8e-166 588.6 506 60.9
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.4e-165 587.0 505 61.4
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 7.0e-165 584.7 505 61.4
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 1.2e-164 583.9 507 61.7
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 2.0e-164 583.2 507 59.8
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 5.9e-164 581.6 505 61.6
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 1.3e-163 580.5 501 60.3
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 8.6e-163 577.8 518 59.7
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.1e-162 577.4 517 60.2
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 5.5e-162 575.1 516 60.1
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 7.2e-162 574.7 501 60.5
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 9.5e-162 574.3 509 59.3
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 9.5e-162 574.3 506 60.1
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.2e-161 573.9 518 59.7
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.1e-161 573.2 519 58.2
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 2.1e-161 573.2 508 60.2
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 6.1e-161 571.6 506 60.9
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.4e-160 570.5 517 59.6
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 3.0e-160 569.3 509 58.9
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 3.0e-160 569.3 509 60.1
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 4.0e-160 568.9 498 60.4
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 8.9e-160 567.8 509 61.3
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 3.4e-159 565.8 548 57.5
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 9.8e-159 564.3 511 59.3
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 1.3e-158 563.9 509 58.5
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 8.3e-158 561.2 507 60.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 1.1e-157 560.8 599 52.9
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 4.1e-157 558.9 504 59.9
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 1.6e-156 557.0 507 59.4
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 2.0e-156 556.6 506 58.5
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 3.9e-155 552.4 514 58.2
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 5.0e-155 552.0 511 58.7
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 8.6e-155 551.2 507 57.4
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 3.3e-154 549.3 509 57.8
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 4.3e-154 548.9 506 57.9
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 5.6e-154 548.5 507 58.0
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 7.3e-154 548.1 530 57.2
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.6e-153 547.0 508 58.9
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 1.6e-153 547.0 511 57.7
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.6e-153 547.0 433 66.1
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 3.6e-153 545.8 506 58.1
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.3e-152 543.1 498 59.0
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 2.3e-152 543.1 517 58.0
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.3e-152 543.1 506 56.7
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 4.0e-152 542.3 518 57.1
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 3.4e-151 539.3 506 58.3
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 7.5e-151 538.1 506 56.9
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 4.9e-150 535.4 506 57.3
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 6.4e-150 535.0 506 56.7
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 6.4e-150 535.0 506 56.7
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 7.0e-149 531.6 506 56.3
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 7.0e-149 531.6 507 56.4
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 9.2e-149 531.2 506 56.5
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 2.0e-148 530.0 506 56.5
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.0e-148 530.0 508 57.1
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 1.3e-147 527.3 506 56.1
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 1.7e-147 526.9 510 56.3
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.7e-147 526.9 508 59.3
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 5.0e-147 525.4 504 58.3
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 6.6e-147 525.0 506 56.1
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 6.6e-147 525.0 510 56.1
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 1.8e-144 516.9 506 54.3
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.6e-140 503.8 499 55.7
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 9.5e-138 494.6 511 53.4
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 6.4e-134 481.9 505 54.3
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.7e-132 476.5 356 67.1
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 4.7e-129 465.7 508 52.6
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 4.2e-125 452.6 505 51.7
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 7.3e-122 441.8 524 49.2
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 7.3e-122 441.8 512 51.2
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 8.4e-118 428.3 455 52.5
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 6.1e-84 315.8 531 42.0
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 2.2e-81 307.4 539 38.4
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 3.0e-75 287.0 354 47.7
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 2.0e-74 284.3 532 38.7
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.4e-64 250.8 517 34.8
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.3e-54 218.4 190 63.7
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 2.3e-43 181.0 200 48.5
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.8e-40 171.4 537 29.6
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 6.6e-30 136.3 169 46.2
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 3.1e-19 100.9 211 38.4
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 2.6e-18 97.8 167 37.7
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 7.1e-16 89.7 486 24.7
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 3.4e-10 70.9 65 47.7
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 5.4e-08 63.5 89 36.0
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.2e-07 62.4 64 43.8
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.6e-07 62.0 95 34.7
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.7e-07 61.2 97 33.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.5e-07 60.8 89 36.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 3.5e-07 60.8 89 36.0
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 4.6e-07 60.5 64 43.8
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 4.6e-07 60.5 89 34.8
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 4.6e-07 60.5 89 34.8
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 7.8e-07 59.7 95 34.7
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.3e-06 58.9 89 37.1
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.3e-06 58.9 88 35.2
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.7e-06 58.5 88 35.2
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.9e-06 57.4 73 35.6
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.9e-06 57.4 64 39.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 5.1e-06 57.0 73 38.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 6.6e-06 56.6 73 34.2
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 6.6e-06 56.6 95 33.7
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 6.6e-06 56.6 95 33.7
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 6.6e-06 56.6 89 33.7
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 6.6e-06 56.6 73 38.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 6.6e-06 56.6 73 38.4
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 8.7e-06 56.2 89 33.7
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 8.7e-06 56.2 89 33.7


User provided reference genes

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