Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 6.3e-208 727.2 382 100.0
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.7e-165 586.3 386 84.7
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 2.5e-164 582.4 430 76.7
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 2.5e-148 529.3 387 75.5
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 5.0e-136 488.4 447 63.8
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 5.3e-130 468.4 447 61.3
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 3.8e-128 462.2 447 61.7
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.1e-127 460.7 439 61.5
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 5.5e-127 458.4 445 60.9
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.6e-126 456.8 445 60.7
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 1.6e-126 456.8 444 60.6
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 2.1e-126 456.4 447 60.6
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 3.6e-126 455.7 437 61.6
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 6.1e-126 454.9 445 60.4
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.8e-125 453.4 438 60.3
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 6.7e-125 451.4 445 60.4
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 8.8e-125 451.1 446 59.9
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 2.0e-124 449.9 436 60.8
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 2.0e-124 449.9 446 60.3
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 1.3e-123 447.2 342 74.6
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 3.7e-123 445.7 343 74.3
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.8e-123 445.3 445 59.8
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 1.1e-122 444.1 456 59.2
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.8e-122 443.4 536 53.0
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 4.1e-122 442.2 436 60.8
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 5.3e-122 441.8 441 59.9
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 6.9e-122 441.4 447 59.5
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 2.0e-121 439.9 437 59.7
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 2.6e-121 439.5 442 60.0
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 2.6e-121 439.5 442 60.4
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 1.7e-120 436.8 447 58.8
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 2.9e-120 436.0 442 58.6
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 3.8e-120 435.6 442 59.3
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.8e-120 435.6 443 58.7
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 8.5e-120 434.5 441 58.5
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 2.5e-119 433.0 441 57.6
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 7.2e-119 431.4 445 57.8
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 1.2e-118 430.6 437 58.4
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 2.7e-118 429.5 445 57.3
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 2.7e-118 429.5 451 58.8
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 6.1e-118 428.3 439 60.1
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 7.9e-118 427.9 446 58.3
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 3.9e-117 425.6 437 59.5
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 3.9e-117 425.6 446 58.1
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 6.7e-117 424.9 443 57.8
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.5e-116 423.7 437 58.4
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.5e-116 423.7 556 49.8
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 5.7e-116 421.8 435 58.4
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 5.7e-116 421.8 427 58.1
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.8e-114 416.8 436 58.7
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 2.0e-113 413.3 522 51.5
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 7.7e-113 411.4 442 56.3
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.0e-112 411.0 343 65.6
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.7e-112 410.2 522 51.3
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 2.5e-111 406.4 412 59.2
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.2e-110 404.1 416 58.4
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 1.2e-110 404.1 450 54.7
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.1e-110 403.3 442 56.6
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 6.1e-110 401.7 439 56.0
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 2.3e-109 399.8 453 55.4
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.9e-109 399.1 442 55.0
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 8.8e-109 397.9 433 55.7
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.5e-108 397.1 421 57.0
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.4e-106 390.6 437 54.5
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 4.5e-105 385.6 418 55.3
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 5.9e-105 385.2 433 54.7
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 7.7e-105 384.8 446 54.3
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.5e-103 380.6 331 64.0
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.2e-103 379.4 433 55.0
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 4.2e-103 379.0 434 54.6
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.6e-102 377.1 437 54.7
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 4.7e-102 375.6 441 53.7
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 6.1e-102 375.2 442 53.8
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 1.8e-101 373.6 444 52.9
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 4.4e-100 369.0 432 55.3
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 4.1e-98 362.5 439 53.1
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.5e-95 354.0 374 56.7
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 7.2e-95 351.7 420 52.1
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 7.2e-95 351.7 359 58.2
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 1.8e-93 347.1 444 48.9
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 5.2e-93 345.5 362 58.0
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 2.6e-92 343.2 352 58.8
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 7.5e-92 341.7 360 58.6
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 6.3e-91 338.6 435 49.0
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 6.3e-91 338.6 396 52.5
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 7.0e-90 335.1 416 52.4
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 7.0e-90 335.1 352 58.2
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 7.7e-89 331.6 434 51.6
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 7.7e-89 331.6 342 57.6
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 3.8e-88 329.3 405 50.9
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.1e-87 327.8 430 50.0
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 1.5e-87 327.4 350 56.9
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 2.1e-86 323.6 358 54.7
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 8.0e-86 321.6 425 48.9
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 5.7e-84 315.5 363 54.5
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.4e-82 310.8 404 51.7
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 3.5e-81 306.2 356 53.7
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 7.8e-81 305.1 383 48.0
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.5e-79 300.8 364 53.0
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 5.6e-79 298.9 359 53.5
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 4.0e-77 292.7 373 48.8
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.0e-72 276.6 416 45.4
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.5e-71 273.5 350 51.1
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.7e-70 269.2 346 50.9
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 6.2e-70 268.9 441 42.2
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 8.1e-70 268.5 320 51.9
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 1.5e-68 264.2 326 50.9
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 9.9e-60 235.0 324 45.7
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 4.9e-59 232.6 359 46.2
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 7.1e-58 228.8 172 70.3
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.1e-50 204.9 298 47.0
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 2.7e-49 200.3 222 57.2
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 9.6e-47 191.8 192 59.4
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 4.0e-37 159.8 266 36.8
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 4.0e-37 159.8 85 94.1
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 9.0e-37 158.7 84 95.2
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 4.5e-36 156.4 358 34.4
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 6.4e-35 152.5 84 89.3
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 2.7e-33 147.1 89 85.4
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.6e-33 146.4 83 88.0
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.9e-31 141.0 83 86.7
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.1e-30 137.5 88 77.3
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 4.8e-30 136.3 82 84.1
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 3.1e-29 133.7 82 81.7
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 4.0e-29 133.3 321 33.6
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.0e-27 128.6 81 79.0
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 1.0e-27 128.6 84 76.2
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.8e-27 126.7 76 81.6
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 8.4e-27 125.6 82 78.0
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 9.3e-26 122.1 81 72.8
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 4.2e-18 96.7 52 90.4
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.5e-12 78.2 315 28.9
PGSC0003DMG402028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.5e-12 78.2 56 80.4
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 6.5e-11 72.8 51 74.5
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 6.1e-09 66.2 42 73.8


User provided reference genes

Program Settings