Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 0.0e+00 1191.0 630 100.0
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 0.0e+00 1089.3 632 89.9
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.2e-243 846.7 634 71.8
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 8.0e-224 780.8 635 71.3
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 1.6e-163 580.5 640 54.4
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.9e-161 573.5 655 52.8
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.6e-158 563.1 575 56.5
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 3.8e-157 559.3 645 52.1
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 2.7e-155 553.1 637 51.5
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 2.7e-155 553.1 645 54.1
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 1.1e-153 547.7 650 51.7
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.9e-153 547.0 401 71.8
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 1.1e-151 541.2 400 71.0
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 5.5e-148 528.9 574 53.5
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 2.3e-146 523.5 639 49.5
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.5e-145 520.8 639 50.1
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 1.0e-141 508.1 638 49.7
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.9e-140 503.8 639 49.8
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 7.4e-137 491.9 554 52.3
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 4.5e-134 482.6 639 47.9
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 7.6e-134 481.9 643 48.5
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 5.7e-129 465.7 641 47.6
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 9.7e-129 464.9 537 52.0
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 2.2e-128 463.8 639 47.3
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 4.8e-128 462.6 642 46.7
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 2.0e-126 457.2 639 46.8
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 5.9e-126 455.7 629 46.9
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 3.6e-123 446.4 708 43.6
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 4.6e-123 446.0 639 45.2
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 2.2e-120 437.2 644 45.2
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 6.9e-119 432.2 640 44.2
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 1.7e-117 427.6 656 44.4
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 8.5e-117 425.2 641 44.3
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 5.1e-114 416.0 518 49.0
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 1.5e-113 414.5 638 43.3
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 1.8e-111 407.5 655 43.5
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-108 397.9 646 42.9
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 3.2e-108 396.7 652 43.4
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.2e-108 396.7 648 43.2
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.2e-108 395.6 649 42.8
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 6.1e-107 392.5 641 43.1
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.4e-106 391.3 649 43.0
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 1.8e-106 391.0 640 42.3
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.1e-105 388.3 658 43.3
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 2.0e-105 387.5 651 43.6
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 8.2e-104 382.1 639 42.1
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 7.7e-102 375.6 653 40.7
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 1.0e-101 375.2 651 44.5
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 2.9e-101 373.6 683 40.1
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 3.6e-99 366.7 646 41.0
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 6.1e-99 365.9 642 41.0
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 4.0e-98 363.2 638 40.1
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 2.6e-97 360.5 642 40.8
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 7.5e-97 359.0 668 40.4
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 2.8e-96 357.1 571 41.5
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 3.7e-96 356.7 670 40.7
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 6.3e-96 355.9 634 43.1
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 5.9e-94 349.4 640 40.6
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 7.7e-94 349.0 652 39.9
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.0e-93 348.6 639 40.1
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 1.3e-93 348.2 633 40.0
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.3e-93 348.2 668 40.1
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 1.1e-92 345.1 644 40.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.5e-92 342.8 649 39.1
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 7.2e-92 342.4 645 39.5
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 6.1e-91 339.3 598 39.6
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 3.0e-90 337.0 696 38.1
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 3.4e-89 333.6 645 39.2
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 3.4e-89 333.6 647 40.0
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 3.4e-89 333.6 646 39.8
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 9.8e-89 332.0 647 40.0
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 2.2e-88 330.9 651 38.1
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 6.3e-88 329.3 643 38.4
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.3e-88 329.3 647 38.3
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 7.0e-87 325.9 657 38.4
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 9.2e-87 325.5 651 39.8
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 9.2e-87 325.5 651 39.8
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 2.0e-86 324.3 644 39.9
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 8.6e-85 318.9 654 37.5
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 1.9e-84 317.8 535 40.9
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.1e-83 314.3 461 44.9
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 1.0e-82 312.0 603 39.1
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 3.7e-80 303.5 666 37.7
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 5.9e-78 296.2 516 41.1
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 6.6e-77 292.7 645 37.8
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 9.5e-76 288.9 622 35.9
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 1.7e-72 278.1 638 37.0
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 3.2e-71 273.9 642 34.7
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.0e-69 268.9 525 36.0
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 4.3e-68 263.5 633 35.1
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 5.6e-68 263.1 633 35.1
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 3.1e-66 257.3 634 34.9
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 9.8e-65 252.3 605 35.0
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 1.3e-64 251.9 390 42.1
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 1.1e-63 248.8 526 37.1
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 6.6e-61 239.6 375 42.9
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 6.6e-61 239.6 375 42.9
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.5e-60 238.4 606 33.8
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.8e-59 234.2 466 37.1
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 6.4e-56 223.0 361 43.5
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 1.7e-53 214.9 185 61.6
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 8.4e-48 196.1 374 38.0
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 2.8e-43 181.0 409 36.7
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 1.1e-42 179.1 199 55.8
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 3.8e-40 170.6 648 29.3
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 4.9e-40 170.2 246 44.3
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 4.9e-40 170.2 411 34.5
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 1.9e-39 168.3 240 45.0
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.4e-39 167.9 578 31.7
Peaxi162Scf00114g01013 Petunia axillaris HOM05D004863 ORTHO05D005802 3.5e-38 164.1 104 84.6
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-37 162.2 268 40.3
Solyc06g074860.2 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.9e-36 158.3 105 82.9
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 9.6e-36 156.0 233 43.3
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 1.3e-35 155.6 204 52.9
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 5.8e-33 146.7 650 30.2
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 9.9e-33 146.0 221 42.1
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 4.2e-31 140.6 195 47.7
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 1.3e-29 135.6 552 28.1
TPR.G25337 Trifolium pratense HOM05D004863 ORTHO05D005802 1.6e-27 128.6 243 41.6
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 6.2e-27 126.7 132 53.0
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 2.6e-25 121.3 302 34.1
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 1.3e-24 119.0 646 25.9
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 5.7e-20 103.6 128 45.3
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 5.3e-18 97.1 141 41.1
HanXRQChr08g0221791 Helianthus annuus HOM05D004863 ORTHO05D005802 4.5e-17 94.0 242 35.1
MD04G1165800 Malus domestica HOM05D004863 ORTHO05D005802 2.2e-16 91.7 207 39.1
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 2.2e-16 91.7 158 38.0
vmacro10020 Vaccinium macrocarpon HOM05D004863 ORTHO05D005802 2.9e-16 91.3 63 82.5
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.5e-16 90.1 178 37.1
CDE02G3956 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 1.1e-15 89.4 155 40.6
Zm00001eb297000 Zea mays HOM05D004863 ORTHO05D005802 4.2e-15 87.4 151 42.4
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 9.3e-15 86.3 164 36.6
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 7.9e-14 83.2 148 39.2
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 5.1e-13 80.5 670 23.7
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 1.6e-11 75.5 109 41.3
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis HOM05D004863 ORTHO05D005802 6.3e-11 73.6 78 52.6
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 1.4e-10 72.4 111 38.7
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 2.4e-10 71.6 115 36.5
Solyc06g074880.1 Solanum lycopersicum HOM05D004863 ORTHO05D005802 3.1e-10 71.2 60 61.7
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 4.1e-10 70.9 177 36.7
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 5.3e-10 70.5 109 39.4
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 6.9e-10 70.1 705 25.1
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 3.4e-09 67.8 146 35.6
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 5.9e-09 67.0 55 54.5
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 1.9e-07 62.0 110 33.6
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 1.9e-07 62.0 110 33.6
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 1.9e-07 62.0 110 33.6
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 1.9e-07 62.0 110 33.6


User provided reference genes

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