Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.0e-158 562.4 280 100.0
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 4.2e-116 421.8 222 92.3
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.1e-115 419.5 224 94.6
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-114 417.2 223 92.8
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-114 415.6 223 92.4
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 8.7e-114 414.1 223 91.9
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-112 410.2 260 83.5
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.0e-106 389.0 222 85.1
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.7e-105 384.8 222 83.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.6e-104 383.3 218 85.3
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.6e-102 375.9 219 82.6
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.8e-102 374.8 231 78.4
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.3e-101 373.6 222 79.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 3.8e-101 372.1 217 82.9
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 6.5e-101 371.3 222 78.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 6.5e-101 371.3 222 79.7
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.4e-100 370.2 219 82.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.4e-100 370.2 223 82.1
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.5e-100 369.4 222 79.7
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 4.2e-100 368.6 222 77.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 9.3e-100 367.5 221 80.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.2e-99 367.1 222 77.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.2e-99 367.1 222 78.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.7e-99 365.9 219 78.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 6.1e-99 364.8 222 79.7
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 3.9e-98 362.1 222 78.4
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.7e-98 360.9 216 79.2
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.7e-98 360.9 216 79.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.1e-97 360.5 222 76.1
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.5e-97 359.4 222 77.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.5e-97 359.4 224 77.2
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 7.4e-97 357.8 223 76.7
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.7e-97 357.5 264 69.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 9.7e-97 357.5 223 77.1
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 9.7e-97 357.5 216 77.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-96 355.1 221 76.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.2e-96 354.4 222 75.2
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.1e-95 354.0 223 76.2
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.8e-95 353.2 222 75.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.4e-95 352.8 223 75.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.1e-95 352.4 222 76.1
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 5.3e-95 351.7 216 75.9
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 9.0e-95 350.9 222 75.7
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.2e-94 350.5 259 67.2
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.2e-94 350.5 259 67.2
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.0e-94 349.7 217 82.0
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 3.4e-94 349.0 218 75.7
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.5e-94 348.6 222 75.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.5e-94 348.6 223 72.2
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.7e-94 347.8 222 70.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.3e-93 347.1 222 71.2
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.1e-92 344.0 250 70.0
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.4e-92 343.6 238 71.8
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 5.5e-92 341.7 218 74.3
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.6e-91 340.1 218 73.9
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.7e-91 339.3 218 72.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.6e-91 339.0 227 68.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 4.6e-91 338.6 218 72.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 6.1e-91 338.2 251 67.3
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 6.7e-90 334.7 223 74.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 8.8e-90 334.3 218 72.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.1e-89 334.0 280 62.5
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.5e-89 332.8 215 74.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.3e-89 332.4 218 72.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.7e-89 330.9 222 71.2
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.3e-88 330.5 222 72.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.8e-87 326.6 218 69.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.1e-87 325.9 216 69.4
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.5e-86 323.6 215 70.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.6e-86 322.8 215 69.8
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.6e-86 322.8 215 69.8
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-86 322.8 217 71.9
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-86 322.4 215 73.0
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.7e-85 320.1 218 67.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.5e-85 317.8 242 66.9
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.1e-84 317.4 217 68.7
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.4e-84 317.0 215 68.4
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.5e-84 315.1 194 83.0
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 2.7e-83 312.8 218 65.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.7e-83 312.0 201 71.1
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.3e-82 309.7 216 67.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 5.1e-82 308.5 210 69.0
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 8.8e-82 307.8 215 65.1
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.5e-81 307.0 215 67.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.0e-81 306.6 218 65.1
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.3e-81 305.8 212 68.9
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 5.7e-81 305.1 217 65.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 9.7e-81 304.3 215 66.5
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.3e-80 303.9 180 80.6
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.3e-80 303.9 215 65.6
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.3e-80 303.9 215 65.6
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.3e-80 303.9 215 65.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.3e-80 303.9 218 64.2
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.2e-80 303.1 222 64.4
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.7e-80 302.4 215 66.0
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 6.3e-80 301.6 216 63.0
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.4e-79 299.7 218 63.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 4.1e-79 298.9 217 64.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 9.1e-79 297.7 215 63.7
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.6e-78 296.2 218 61.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.5e-78 295.4 218 61.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-77 294.3 218 67.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.0e-77 294.3 211 65.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.5e-76 289.7 188 73.4
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.2e-75 287.3 218 63.3
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-73 278.9 183 72.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-72 275.4 221 63.8
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.4e-71 273.1 172 78.5
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.7e-70 268.1 225 54.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.0e-69 267.7 223 63.7
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.7e-69 266.9 169 77.5
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.9e-69 266.2 217 54.8
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.1e-68 264.2 218 59.6
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.5e-68 263.1 164 76.2
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.5e-68 263.1 141 85.8
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-68 263.1 213 63.8
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.6e-67 259.2 169 71.0
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.8e-66 255.0 165 75.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.8e-66 255.0 165 75.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-65 254.2 219 50.7
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-65 254.2 169 74.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.7e-64 250.4 169 71.0
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 4.8e-64 248.8 142 81.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-61 240.4 168 71.4
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 5.0e-61 238.8 164 73.2
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.5e-61 238.4 189 63.5
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.5e-60 236.5 126 93.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.6e-59 233.8 213 47.4
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.7e-59 232.3 212 56.6
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 6.1e-59 231.9 150 76.0
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.3e-58 229.9 212 49.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-57 226.1 166 68.1
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-55 218.8 143 72.0
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.2e-52 209.1 144 73.6
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 6.1e-51 205.3 208 43.8
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.0e-50 204.5 211 46.9
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.3e-50 203.4 130 74.6
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.2e-48 196.8 191 48.2
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.1e-47 192.6 214 42.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-47 191.8 133 72.9
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-46 191.0 123 75.6
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.0e-46 190.3 219 38.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-44 182.2 135 66.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-41 173.7 117 71.8
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.6e-38 162.5 160 51.9
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.0e-37 161.4 127 66.1
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.3e-36 156.4 101 75.2
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 3.5e-30 136.3 91 73.6
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 8.1e-27 125.2 80 72.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.4e-26 124.4 76 77.6
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-25 119.8 143 46.9
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 5.8e-25 119.0 130 51.5
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.6e-20 102.4 52 84.6
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.1e-19 98.6 106 52.8
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.8e-18 97.4 56 75.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.2e-17 94.7 82 59.8
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 6.0e-14 82.4 102 47.1
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.3e-12 75.5 66 59.1
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.3e-11 74.7 163 28.8
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 9.9e-09 65.1 55 56.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 9.9e-09 65.1 55 56.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.7e-08 64.3 54 57.4
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-07 60.8 49 59.2


User provided reference genes

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