Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009811g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.0e-51 205.7 122 100.0
Nitab4.5_0026257g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.3e-34 149.1 118 82.2
Nitab4.5_0001618g0100 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.1e-25 120.2 94 80.9
Nitab4.5_0002503g0090 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.8e-24 115.5 113 74.3
Nitab4.5_0008569g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.5e-22 109.8 123 63.4
Nitab4.5_0005694g0030 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.9e-21 105.5 123 62.6
Solyc06g082100.4 Solanum lycopersicum HOM05D000924 ORTHO05D001209 3.8e-21 105.1 122 68.0
Sed0004818 Sechium edule HOM05D000924 ORTHO05D001209 5.4e-20 101.3 118 67.8
CAN.G1095.6 Capsicum annuum HOM05D000924 ORTHO05D001209 7.9e-19 97.4 122 61.5
ClCG05G013070 Citrullus lanatus HOM05D000924 ORTHO05D001209 7.9e-19 97.4 113 55.8
Nn6g31594 Nelumbo nucifera HOM05D000924 ORTHO05D001209 7.9e-19 97.4 119 58.8
Peaxi162Scf00064g01426 Petunia axillaris HOM05D000924 ORTHO05D001209 1.0e-18 97.1 122 53.3
Dinv10292 Davidia involucrata HOM05D000924 ORTHO05D001209 1.7e-18 96.3 121 63.6
MD04G1240400 Malus domestica HOM05D000924 ORTHO05D001209 1.7e-18 96.3 119 63.9
Actinidia17090 Actinidia chinensis HOM05D000924 ORTHO05D001209 2.3e-18 95.9 118 61.9
Hma1.2p1_0914F.1_g236150 Hydrangea macrophylla HOM05D000924 ORTHO05D001209 3.0e-18 95.5 118 64.4
Manes.18G005100 Manihot esculenta HOM05D000924 ORTHO05D001209 3.0e-18 95.5 120 59.2
Dinv32321 Davidia involucrata HOM05D000924 ORTHO05D001209 5.1e-18 94.7 119 63.0
DCAR_003081 Daucus carota HOM05D000924 ORTHO05D001209 6.6e-18 94.4 119 64.7
RcHm_v2.0_Chr7g0209461 Rosa chinensis HOM05D000924 ORTHO05D001209 6.6e-18 94.4 121 62.0
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 6.6e-18 94.4 115 64.3
arahy.Tifrunner.gnm1.ann1.L2QDU1 Arachis hypogaea HOM05D000924 ORTHO05D001209 1.1e-17 93.6 119 61.3
ClCG11G018370 Citrullus lanatus HOM05D000924 ORTHO05D001209 1.5e-17 93.2 116 62.9
Migut.C00343 Erythranthe guttata HOM05D000924 ORTHO05D001209 1.5e-17 93.2 120 63.3
MD12G1257300 Malus domestica HOM05D000924 ORTHO05D001209 1.9e-17 92.8 119 63.9
arahy.Tifrunner.gnm1.ann1.1JT8J9 Arachis hypogaea HOM05D000924 ORTHO05D001209 2.5e-17 92.4 119 60.5
arahy.Tifrunner.gnm1.ann1.JY4JA5 Arachis hypogaea HOM05D000924 ORTHO05D001209 2.5e-17 92.4 119 60.5
FvH4_5g21940 Fragaria vesca HOM05D000924 ORTHO05D001209 2.5e-17 92.4 120 63.3
FAN18G2116 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.5e-17 92.4 120 63.3
Lj5A314T76 Lonicera japonica HOM05D000924 ORTHO05D001209 2.5e-17 92.4 122 60.7
FAN08G2720 Fragaria x ananassa HOM05D000924 ORTHO05D001209 3.3e-17 92.0 121 62.8
Lsat_1_v5_gn_3_7441 Lactuca sativa HOM05D000924 ORTHO05D001209 3.3e-17 92.0 119 61.3
Cc02_g28440 Coffea canephora HOM05D000924 ORTHO05D001209 4.3e-17 91.7 120 60.8
MELO3C006732.2 Cucumis melo HOM05D000924 ORTHO05D001209 5.6e-17 91.3 117 64.1
CsaV3_3G015340 Cucumis sativus L. HOM05D000924 ORTHO05D001209 5.6e-17 91.3 117 64.1
ClCG05G006710 Citrullus lanatus HOM05D000924 ORTHO05D001209 7.3e-17 90.9 118 62.7
HanXRQChr17g0533721 Helianthus annuus HOM05D000924 ORTHO05D001209 7.3e-17 90.9 118 61.0
Nitab4.5_0003811g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 7.3e-17 90.9 113 63.7
PSO063G7524 Papaver somniferum HOM05D000924 ORTHO05D001209 7.3e-17 90.9 125 51.2
TWI36G0693 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 7.3e-17 90.9 119 61.3
MSTRG.1010 Avicennia marina HOM05D000924 ORTHO05D001209 9.6e-17 90.5 121 62.8
FAN13G1554 Fragaria x ananassa HOM05D000924 ORTHO05D001209 9.6e-17 90.5 119 62.2
Potri.012G097300 Populus trichocarpa HOM05D000924 ORTHO05D001209 9.6e-17 90.5 122 54.1
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 9.6e-17 90.5 118 63.6
COL.COLO4_18725 Corchorus olitorius HOM05D000924 ORTHO05D001209 1.3e-16 90.1 119 61.3
Gohir.A10G187300 Gossypium hirsutum HOM05D000924 ORTHO05D001209 1.3e-16 90.1 121 62.0
Glyma.08G173500 Glycine max HOM05D000924 ORTHO05D001209 1.6e-16 89.7 122 56.6
PSO782G5199 Papaver somniferum HOM05D000924 ORTHO05D001209 1.6e-16 89.7 123 59.3
SGA_v2.0_scaffold161G37860 Striga asiatica HOM05D000924 ORTHO05D001209 2.1e-16 89.4 120 60.8
CSS0036316 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 2.8e-16 89.0 120 60.0
Gohir.D10G194400 Gossypium hirsutum HOM05D000924 ORTHO05D001209 2.8e-16 89.0 121 62.0
Gorai.011G217300 Gossypium raimondii HOM05D000924 ORTHO05D001209 2.8e-16 89.0 121 62.0
Phvul.005G055300 Phaseolus vulgaris HOM05D000924 ORTHO05D001209 2.8e-16 89.0 122 58.2
Sc15g0004020 Simmondsia chinensis HOM05D000924 ORTHO05D001209 2.8e-16 89.0 119 60.5
TAR369G0929 Trochodendron aralioides HOM05D000924 ORTHO05D001209 2.8e-16 89.0 112 65.2
CSS0008681 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 3.6e-16 88.6 120 60.0
CANSAT78G0159 Cannabis sativa HOM05D000924 ORTHO05D001209 3.6e-16 88.6 115 53.0
TWI14G0143 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 3.6e-16 88.6 119 59.7
Lj5C314G2 Lonicera japonica HOM05D000924 ORTHO05D001209 4.8e-16 88.2 120 54.2
Cpa.g.sc36.108 Carica papaya HOM05D000924 ORTHO05D001209 6.2e-16 87.8 118 61.0
Prupe.6G358100 Prunus persica HOM05D000924 ORTHO05D001209 6.2e-16 87.8 119 62.2
COL.COLO4_20702 Corchorus olitorius HOM05D000924 ORTHO05D001209 8.1e-16 87.4 117 62.4
SHI31129 Sapria himalayana HOM05D000924 ORTHO05D001209 1.1e-15 87.0 118 61.0
AUR62032373 Chenopodium quinoa HOM05D000924 ORTHO05D001209 1.4e-15 86.7 117 61.5
PGR083G1659 Punica granatum HOM05D000924 ORTHO05D001209 1.8e-15 86.3 118 62.7
Nitab4.5_0004994g0070 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.4e-15 85.9 57 78.9
Glyma.15G253800 Glycine max HOM05D000924 ORTHO05D001209 4.0e-15 85.1 122 56.6
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 4.0e-15 85.1 121 52.1
Carub.0001s2043 Capsella rubella HOM05D000924 ORTHO05D001209 5.3e-15 84.7 120 55.0
ECA246G0163 Erigeron canadensis HOM05D000924 ORTHO05D001209 6.9e-15 84.3 119 57.1
Migut.N01909 Erythranthe guttata HOM05D000924 ORTHO05D001209 9.0e-15 84.0 118 56.8
Zm00001eb328850 Zea mays HOM05D000924 ORTHO05D001209 1.2e-14 83.6 122 48.4
Aqoxy3G02568 Aquilegia oxysepala HOM05D000924 ORTHO05D001209 1.5e-14 83.2 114 62.3
TPR.G10336 Trifolium pratense HOM05D000924 ORTHO05D001209 2.0e-14 82.8 119 59.7
VMungo1080G0748 Vigna mungo HOM05D000924 ORTHO05D001209 2.0e-14 82.8 119 57.1
Thecc.10G149400 Theobroma cacao HOM05D000924 ORTHO05D001209 3.4e-14 82.0 120 58.3
Ciclev10010890m.g Citrus clementina HOM05D000924 ORTHO05D001209 4.5e-14 81.6 120 60.0
Eucgr.F01825 Eucalyptus grandis HOM05D000924 ORTHO05D001209 4.5e-14 81.6 118 59.3
TPR.G25887 Trifolium pratense HOM05D000924 ORTHO05D001209 4.5e-14 81.6 119 58.0
CANSAT80G1721 Cannabis sativa HOM05D000924 ORTHO05D001209 5.8e-14 81.3 120 58.3
Duzib128G1905 Durio zibethinus HOM05D000924 ORTHO05D001209 5.8e-14 81.3 121 57.9
THA.LOC104812019 Tarenaya hassleriana HOM05D000924 ORTHO05D001209 7.6e-14 80.9 113 60.2
AT1G20960 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 9.9e-14 80.5 120 54.2
Nitab4.5_0004801g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 9.9e-14 80.5 86 67.4
MBI15_g36602_MAGBIO Magnolia biondii HOM05D000924 ORTHO05D001209 1.3e-13 80.1 123 56.1
Sabra15G0116500 Salix brachista HOM05D000924 ORTHO05D001209 1.3e-13 80.1 118 53.4
BcaB03g14290 Brassica carinata HOM05D000924 ORTHO05D001209 1.7e-13 79.7 115 55.7
Thhalv10006525m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 1.7e-13 79.7 113 56.6
Medtr2g064740 Medicago truncatula HOM05D000924 ORTHO05D001209 1.7e-13 79.7 120 59.2
Oeu060274.1 Olea europaea HOM05D000924 ORTHO05D001209 2.2e-13 79.3 109 53.2
BcaC06g34852 Brassica carinata HOM05D000924 ORTHO05D001209 2.9e-13 79.0 114 44.7
A07p15350 Brassica napus HOM05D000924 ORTHO05D001209 2.9e-13 79.0 114 44.7
C07p22650 Brassica napus HOM05D000924 ORTHO05D001209 2.9e-13 79.0 114 44.7
BolC7t42794H Brassica oleracea HOM05D000924 ORTHO05D001209 2.9e-13 79.0 114 44.7
BraA07t29275Z Brassica rapa HOM05D000924 ORTHO05D001209 2.9e-13 79.0 114 44.7
Sopen06g033490 Solanum pennellii HOM05D000924 ORTHO05D001209 2.9e-13 79.0 122 57.4
Rhsim06G0001600 Rhododendron simsii HOM05D000924 ORTHO05D001209 3.8e-13 78.6 118 56.8
BcaC03g14318 Brassica carinata HOM05D000924 ORTHO05D001209 4.9e-13 78.2 115 45.2
Ca_03699_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 4.9e-13 78.2 119 58.8
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 4.9e-13 78.2 114 57.0
PGSC0003DMG400030366 Solanum tuberosum HOM05D000924 ORTHO05D001209 4.9e-13 78.2 125 55.2
Nitab4.5_0000110g0580 Nicotiana tabacum HOM05D000924 ORTHO05D001209 6.4e-13 77.8 120 55.8
Potri.015G095500 Populus trichocarpa HOM05D000924 ORTHO05D001209 8.4e-13 77.4 118 53.4
Ah.01g015930 Amaranthus hybridus HOM05D000924 ORTHO05D001209 1.1e-12 77.0 122 59.0
AL4G40630 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 1.1e-12 77.0 115 42.6
EL10Ac2g02545 Beta vulgaris HOM05D000924 ORTHO05D001209 1.4e-12 76.6 119 53.8
Nitab4.5_0003918g0050 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.9e-12 76.3 120 45.0
A02p10320 Brassica napus HOM05D000924 ORTHO05D001209 2.4e-12 75.9 115 44.3
BraA02t06099Z Brassica rapa HOM05D000924 ORTHO05D001209 2.4e-12 75.9 115 44.3
AUR62024847 Chenopodium quinoa HOM05D000924 ORTHO05D001209 2.4e-12 75.9 115 39.1
CARHR021420 Cardamine hirsuta HOM05D000924 ORTHO05D001209 3.2e-12 75.5 112 54.5
CDE07G1660 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 3.2e-12 75.5 115 53.9
CDE06G2318 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 4.2e-12 75.1 120 57.5
C02p17050 Brassica napus HOM05D000924 ORTHO05D001209 9.3e-12 73.9 115 43.5
BolC2t07803H Brassica oleracea HOM05D000924 ORTHO05D001209 9.3e-12 73.9 115 43.5
CARHR137320 Cardamine hirsuta HOM05D000924 ORTHO05D001209 9.3e-12 73.9 119 47.1
FAN05G2437 Fragaria x ananassa HOM05D000924 ORTHO05D001209 9.3e-12 73.9 118 42.4
MD09G1063000 Malus domestica HOM05D000924 ORTHO05D001209 1.2e-11 73.6 115 53.0
Nitab4.5_0003582g0070 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.2e-11 73.6 76 80.3
AL1G33990 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 2.1e-11 72.8 113 55.8
Thhalv10016123m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 2.1e-11 72.8 119 50.4
CAN.G993.32 Capsicum annuum HOM05D000924 ORTHO05D001209 3.5e-11 72.0 119 48.7
ECA232G3463 Erigeron canadensis HOM05D000924 ORTHO05D001209 3.5e-11 72.0 110 39.1
AT2G42270 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 4.6e-11 71.6 114 42.1
FvH4_6g00860 Fragaria vesca HOM05D000924 ORTHO05D001209 6.0e-11 71.2 117 46.2
FAN14G0455 Fragaria x ananassa HOM05D000924 ORTHO05D001209 6.0e-11 71.2 117 46.2
Cc05_g03360 Coffea canephora HOM05D000924 ORTHO05D001209 1.3e-10 70.1 125 42.4
Nitab4.5_0001515g0080 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.8e-10 69.7 118 47.5
Carub.0004s2461 Capsella rubella HOM05D000924 ORTHO05D001209 2.3e-10 69.3 117 43.6
FAN09G1765 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.3e-10 69.3 118 43.2
Lj3g0017691 Lotus japonicus HOM05D000924 ORTHO05D001209 2.3e-10 69.3 115 53.9
SMO347G0607 Selaginella moellendorffii HOM05D000924 ORTHO05D001209 2.3e-10 69.3 112 50.9
Aa31LG7G5140 Aethionema arabicum HOM05D000924 ORTHO05D001209 5.1e-10 68.2 118 47.5
AUR62024846 Chenopodium quinoa HOM05D000924 ORTHO05D001209 5.1e-10 68.2 115 40.0
Os03g0743800 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 5.1e-10 68.2 116 35.3
Lsat_1_v5_gn_3_7501 Lactuca sativa HOM05D000924 ORTHO05D001209 8.7e-10 67.4 123 53.7
CiPaw.07G131100 Carya illinoinensis HOM05D000924 ORTHO05D001209 1.9e-09 66.2 119 55.5
AL5G18660 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 2.5e-09 65.9 108 42.6
Pp3c1_35880 Physcomitrium patens HOM05D000924 ORTHO05D001209 2.5e-09 65.9 114 50.0
Mapoly0043s0081 Marchantia polymorpha HOM05D000924 ORTHO05D001209 4.3e-09 65.1 110 49.1
C03p28130 Brassica napus HOM05D000924 ORTHO05D001209 7.4e-09 64.3 115 34.8
Nitab4.5_0007467g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 7.4e-09 64.3 114 51.8
BolC3t15183H Brassica oleracea HOM05D000924 ORTHO05D001209 1.3e-08 63.5 115 34.8
Lalb_Chr25g0285181 Lupinus albus HOM05D000924 ORTHO05D001209 4.8e-08 61.6 120 50.8
QL10p013857 Quercus lobata HOM05D000924 ORTHO05D001209 6.2e-08 61.2 109 55.0
Nitab4.5_0000831g0040 Nicotiana tabacum HOM05D000924 ORTHO05D001209 8.1e-08 60.8 69 78.3
BraA08t33566Z Brassica rapa HOM05D000924 ORTHO05D001209 3.1e-07 58.9 114 36.0
DCAR_029050 Daucus carota HOM05D000924 ORTHO05D001209 4.0e-07 58.5 123 39.8
Solyc06g071620.3 Solanum lycopersicum HOM05D000924 ORTHO05D001209 5.3e-07 58.2 52 57.7
ATR0605G032 Amborella trichopoda HOM05D000924 ORTHO05D001209 6.9e-07 57.8 118 52.5
CBR_g70690 Chara braunii HOM05D000924 ORTHO05D001209 6.9e-07 57.8 121 43.8
vmacro14714 Vaccinium macrocarpon HOM05D000924 ORTHO05D001209 6.9e-07 57.8 118 54.2
RcHm_v2.0_Chr3g0448351 Rosa chinensis HOM05D000924 ORTHO05D001209 9.0e-07 57.4 114 37.7
Aa31LG6G12910 Aethionema arabicum HOM05D000924 ORTHO05D001209 1.5e-06 56.6 116 47.4
SEGI_03458 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 1.5e-06 56.6 123 51.2
SEGI_01233 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 5.8e-06 54.7 116 54.3
Ciclev10004124m.g Citrus clementina HOM05D000924 ORTHO05D001209 7.6e-06 54.3 120 45.0


User provided reference genes

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