Gene: Cc02_g28440
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc02_g28440
- Transcript Identifier Cc02_g28440.1
- Gene Type Coding gene
- Location chr2 : 27003620-27012177 : negative
Gene Family Information
- ID HOM05D000924
- #Genes/#Species 651/100
- Phylogenetic origin
- ID ORTHO05D001209
- #Genes/#Species 456/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB Q9VUV9
- UniProtKB Q9U2G0
- UniProtKB A5BZG5
- UniProtKB O75643
- UniProtKB I1KU63
- UniProtKB I1MJ51
- id GSCOCG00009421001
Descriptions
- Description U5 small nuclear ribonucleoprotein 200 kDa helicase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT1G20960 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT1G20960 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G20960 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT2G42270 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G20960 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G20960 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035892 | C2 domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR004179 | Sec63 domain |
| IPR014756 | Immunoglobulin E-set |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR041094 | Brr2, N-terminal helicase PWI domain |
| IPR003593 | AAA+ ATPase domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 16.2.7.1.4 | RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Brr2) |