Gene: AT1G20960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G20960
  • Transcript Identifier AT1G20960.1
  • Gene Type Coding gene
  • Location Chr1 : 7302591-7309914 : negative

Gene Family Information

  • ID HOM05D000924
  • #Genes/#Species 651/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G20960.1
  • symbol emb1507
  • full_name embryo defective 1507
  • uniprot Q9SYP1

Descriptions

  • Description U5 small nuclear ribonucleoprotein helicase
  • Computational description embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778; Bacteria - 7152; Metazoa - 2915; Fungi - 2450; Plants - 1068; Viruses - 118; Other Eukaryotes - 4346 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IMP
Gene OntologymRNA processing1
GO:0000388
IBA
Gene Ontologyspliceosome conformational change to release U4 (or U4atac) and U1 (or U11)2
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IBA
Gene OntologyRNA helicase activity2
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IBA
Gene Ontologyspliceosomal complex2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus4
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014756 Immunoglobulin E-set
IPR003593 AAA+ ATPase domain
IPR004179 Sec63 domain
IPR036390 Winged helix DNA-binding domain superfamily
IPR001650 Helicase, C-terminal
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR035892 C2 domain superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR041094 Brr2, N-terminal helicase PWI domain
Mapman id Description
16.2.7.1.4 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Brr2)