Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.4e-181 639.4 315 100.0
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 5.0e-126 454.9 311 75.9
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 5.6e-109 398.3 320 65.6
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 7.5e-98 361.3 318 61.6
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 3.8e-73 279.3 233 65.7
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 2.7e-71 273.1 272 57.7
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.6e-68 263.8 157 81.5
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.6e-68 262.7 300 51.0
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.8e-57 226.1 321 43.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.8e-51 207.2 307 43.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 6.9e-51 205.3 323 41.2
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 8.4e-49 198.4 315 41.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 7.1e-48 195.3 315 41.0
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.6e-47 192.6 307 40.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.0e-46 189.9 306 40.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 4.3e-45 186.0 421 34.7
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.4e-45 185.3 316 37.0
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.1e-43 179.5 316 37.7
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 9.0e-43 178.3 317 38.2
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 5.3e-35 152.5 318 32.7
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.0e-34 150.6 297 33.3
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.9e-33 146.7 250 37.6
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 3.2e-32 143.3 311 36.7
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.5e-32 142.5 323 32.8
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 7.2e-32 142.1 276 33.0
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.1e-29 134.8 287 33.1
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 9.7e-29 131.7 249 37.3
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 9.1e-27 125.2 319 29.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 2.0e-26 124.0 305 29.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.6e-26 123.6 288 33.0
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-25 121.3 341 30.8
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.2e-25 120.6 288 32.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.2e-24 116.7 299 30.1
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 5.5e-24 115.9 184 40.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 5.5e-24 115.9 286 32.9
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 3.6e-23 113.2 207 36.7
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.8e-22 110.9 288 29.9
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 2.6e-21 107.1 347 28.5
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.7e-20 104.4 172 36.0
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.2e-20 104.0 279 30.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 4.8e-20 102.8 280 30.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 8.2e-20 102.1 321 27.7
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.8e-19 100.9 347 28.2
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 4.1e-19 99.8 331 28.7
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-18 97.4 331 28.1
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.0e-18 97.4 331 28.7
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 4.5e-18 96.3 331 28.4
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 5.9e-18 95.9 331 28.4
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.0e-17 95.1 333 27.3
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.0e-17 95.1 287 28.6
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.3e-17 94.7 311 28.0
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.2e-17 94.0 328 28.4
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.8e-17 93.2 312 27.9
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 5.0e-17 92.8 95 49.5
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.9e-16 90.9 295 28.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.2e-16 89.7 284 27.8
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.5e-16 89.4 331 28.4
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 5.5e-16 89.4 277 27.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 7.2e-16 89.0 314 27.1
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 7.2e-16 89.0 314 27.1
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.2e-15 88.2 282 28.4
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.1e-15 87.4 278 27.7
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-15 87.0 268 28.4
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.6e-15 86.7 310 28.4
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 6.1e-15 85.9 255 27.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.0e-14 85.1 276 29.7
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.4e-14 84.7 316 28.2
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 3.0e-14 83.6 98 49.0
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.0e-14 83.6 308 26.0
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.0e-14 83.2 106 45.3
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.2e-14 82.8 338 26.9
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-13 81.3 308 25.6
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 4.4e-13 79.7 193 30.1
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 2.2e-12 77.4 310 26.5
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.2e-12 77.4 208 29.3
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 2.2e-12 77.4 148 35.1
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.7e-12 76.6 315 27.3
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.8e-11 74.3 301 24.9
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 4.1e-11 73.2 284 23.2
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 7.0e-11 72.4 318 25.2
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 7.0e-11 72.4 173 30.6
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-10 71.6 308 25.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.0e-10 70.9 272 25.7
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.7e-10 70.5 309 24.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.7e-10 70.5 272 25.7
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 3.5e-10 70.1 213 29.1
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 4.5e-10 69.7 129 33.3
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 4.5e-10 69.7 351 24.8
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.2e-09 67.4 135 31.1
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 2.9e-09 67.0 133 34.6
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.9e-09 67.0 126 34.1
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.8e-09 66.6 138 29.7
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.0e-09 66.2 317 26.8
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.5e-08 64.7 129 31.8
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.5e-08 64.7 188 29.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-08 63.9 69 44.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.5e-08 63.9 139 31.7
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 3.2e-08 63.5 136 31.6
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 3.2e-08 63.5 86 41.9
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 3.2e-08 63.5 138 30.4
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 3.2e-08 63.5 139 33.8
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 3.2e-08 63.5 194 29.9
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 4.2e-08 63.2 130 33.1
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 4.2e-08 63.2 130 33.1
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 4.2e-08 63.2 130 33.1
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 4.2e-08 63.2 198 30.3
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 5.5e-08 62.8 143 30.8
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.5e-08 62.8 241 27.0
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 5.5e-08 62.8 188 29.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 7.2e-08 62.4 93 36.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 7.2e-08 62.4 127 33.1
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.2e-08 62.4 185 27.0
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 9.4e-08 62.0 127 32.3
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.6e-07 61.2 47 59.6
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.6e-07 61.2 127 32.3
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-07 60.8 141 29.8
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-07 60.8 136 30.1
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.1e-07 60.8 130 30.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.7e-07 60.5 129 31.8
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-07 60.5 57 52.6
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.6e-07 60.1 127 31.5
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.6e-07 60.1 127 31.5
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.6e-07 60.1 70 44.3
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 4.7e-07 59.7 127 33.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 6.1e-07 59.3 170 28.8
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 6.1e-07 59.3 170 28.8
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 6.1e-07 59.3 105 34.3
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 8.0e-07 58.9 128 32.0
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 8.0e-07 58.9 63 47.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.0e-06 58.5 127 29.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.4e-06 58.2 160 30.6
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.4e-06 58.2 55 47.3
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.4e-06 58.2 135 33.3
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.8e-06 57.8 136 28.7
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.8e-06 57.8 133 31.6
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.8e-06 57.8 130 31.5
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.8e-06 57.8 45 57.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-06 57.4 140 29.3
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-06 57.4 133 31.6
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 2.3e-06 57.4 133 31.6
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 2.3e-06 57.4 133 31.6
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 2.3e-06 57.4 127 31.5
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.0e-06 57.0 127 29.9
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 3.0e-06 57.0 127 31.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.0e-06 57.0 127 30.7
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 3.0e-06 57.0 45 57.8
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.0e-06 56.6 130 30.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 5.2e-06 56.2 127 30.7
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 5.2e-06 56.2 133 29.3
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 6.8e-06 55.8 164 29.9
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 6.8e-06 55.8 136 27.2
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 6.8e-06 55.8 127 29.9
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 6.8e-06 55.8 131 29.8
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 8.8e-06 55.5 178 25.3


User provided reference genes

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