Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007967g0060 Nicotiana tabacum HOM05D003452 ORTHO05D004046 5.6e-77 290.8 142 100.0
Nitab4.5_0001192g0060 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.6e-39 166.4 154 61.0
Nitab4.5_0001297g0030 Nicotiana tabacum HOM05D003452 ORTHO05D004046 2.2e-33 146.0 86 89.5
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 1.6e-31 139.8 153 54.9
Sopen10g033610 Solanum pennellii HOM05D003452 ORTHO05D004046 2.7e-31 139.0 153 53.6
Solyc10g084160.2 Solanum lycopersicum HOM05D003452 ORTHO05D004046 4.7e-31 138.3 153 53.6
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 4.7e-31 138.3 153 53.6
Peaxi162Scf00472g00008 Petunia axillaris HOM05D003452 ORTHO05D004046 1.5e-29 133.3 153 53.6
CAN.G1778.3 Capsicum annuum HOM05D003452 ORTHO05D004046 8.2e-28 127.5 150 52.0
MSTRG.2860 Avicennia marina HOM05D003452 ORTHO05D004046 1.3e-25 120.2 154 47.4
Cc07_g06390 Coffea canephora HOM05D003452 ORTHO05D004046 2.2e-25 119.4 153 45.8
Cpa.g.sc55.98 Carica papaya HOM05D003452 ORTHO05D004046 6.5e-25 117.9 153 43.8
SGA_v2.0_scaffold15G07361 Striga asiatica HOM05D003452 ORTHO05D004046 9.4e-24 114.0 172 42.4
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 6.1e-23 111.3 154 42.2
GSVIVG01000228001 Vitis vinifera HOM05D003452 ORTHO05D004046 6.1e-23 111.3 173 42.8
Rhsim10G0113000 Rhododendron simsii HOM05D003452 ORTHO05D004046 1.0e-22 110.5 155 43.9
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 2.3e-22 109.4 153 43.8
Eucgr.I00803 Eucalyptus grandis HOM05D003452 ORTHO05D004046 3.0e-22 109.0 158 44.3
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 6.8e-22 107.8 160 42.5
Migut.H00401 Erythranthe guttata HOM05D003452 ORTHO05D004046 1.5e-21 106.7 159 40.9
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 2.0e-21 106.3 160 41.9
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 4.4e-21 105.1 160 41.2
Oeu008437.1 Olea europaea HOM05D003452 ORTHO05D004046 1.7e-20 103.2 155 41.9
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 2.8e-20 102.4 154 40.9
Oeu049888.1 Olea europaea HOM05D003452 ORTHO05D004046 2.8e-20 102.4 154 41.6
Lj4A155G89 Lonicera japonica HOM05D003452 ORTHO05D004046 3.7e-20 102.1 158 39.9
RcHm_v2.0_Chr2g0106501 Rosa chinensis HOM05D003452 ORTHO05D004046 8.3e-20 100.9 153 40.5
CiPaw.02G006400 Carya illinoinensis HOM05D003452 ORTHO05D004046 1.4e-19 100.1 154 40.3
Hma1.2p1_0017F.1_g011830 Hydrangea macrophylla HOM05D003452 ORTHO05D004046 3.1e-19 99.0 179 36.9
Haze_15356 Corylus avellana HOM05D003452 ORTHO05D004046 7.0e-19 97.8 154 39.0
Duzib147G1492 Durio zibethinus HOM05D003452 ORTHO05D004046 1.2e-18 97.1 153 39.2
MD15G1287900 Malus domestica HOM05D003452 ORTHO05D004046 1.6e-18 96.7 154 39.6
Hund13910 Selenicereus undatus HOM05D003452 ORTHO05D004046 1.6e-18 96.7 160 38.1
PGR004G0567 Punica granatum HOM05D003452 ORTHO05D004046 4.5e-18 95.1 152 39.5
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 1.0e-17 94.0 159 37.7
EL10Ac6g15698 Beta vulgaris HOM05D003452 ORTHO05D004046 1.3e-17 93.6 166 38.6
MD02G1178000 Malus domestica HOM05D003452 ORTHO05D004046 1.3e-17 93.6 154 39.6
QL12p009800 Quercus lobata HOM05D003452 ORTHO05D004046 1.3e-17 93.6 154 40.3
Sc18g0004770 Simmondsia chinensis HOM05D003452 ORTHO05D004046 1.7e-17 93.2 158 39.9
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 2.3e-17 92.8 160 37.5
PSO210G6200 Papaver somniferum HOM05D003452 ORTHO05D004046 2.9e-17 92.4 147 37.4
Gohir.A11G230304 Gossypium hirsutum HOM05D003452 ORTHO05D004046 3.8e-17 92.0 153 37.9
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 5.0e-17 91.7 152 39.5
ClCG01G017040 Citrullus lanatus HOM05D003452 ORTHO05D004046 5.0e-17 91.7 154 36.4
FAN28G2117 Fragaria x ananassa HOM05D003452 ORTHO05D004046 5.0e-17 91.7 153 37.3
Gorai.003G066000 Gossypium raimondii HOM05D003452 ORTHO05D004046 5.0e-17 91.7 153 37.9
CsaV3_6G043510 Cucumis sativus L. HOM05D003452 ORTHO05D004046 6.5e-17 91.3 154 37.0
FvH4_1g16590 Fragaria vesca HOM05D003452 ORTHO05D004046 8.6e-17 90.9 153 36.6
FAN19G1474 Fragaria x ananassa HOM05D003452 ORTHO05D004046 8.6e-17 90.9 153 36.6
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.1e-16 90.5 160 35.6
AUR62038246 Chenopodium quinoa HOM05D003452 ORTHO05D004046 1.5e-16 90.1 154 36.4
PSO210G5185 Papaver somniferum HOM05D003452 ORTHO05D004046 1.5e-16 90.1 147 38.1
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 1.9e-16 89.7 153 37.9
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 1.9e-16 89.7 160 37.5
CSS0049847 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 2.5e-16 89.4 153 37.3
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 3.3e-16 89.0 165 37.6
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 5.5e-16 88.2 154 37.0
MELO3C007581.2 Cucumis melo HOM05D003452 ORTHO05D004046 7.2e-16 87.8 154 36.4
FAN23G2911 Fragaria x ananassa HOM05D003452 ORTHO05D004046 7.2e-16 87.8 153 36.6
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 7.2e-16 87.8 153 37.3
unitig_744.g24371 Utricularia gibba HOM05D003452 ORTHO05D004046 7.2e-16 87.8 84 54.8
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 9.5e-16 87.4 155 38.7
Manes.12G151100 Manihot esculenta HOM05D003452 ORTHO05D004046 9.5e-16 87.4 159 35.8
Thecc.01G062600 Theobroma cacao HOM05D003452 ORTHO05D004046 1.2e-15 87.0 153 36.6
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 2.8e-15 85.9 154 35.1
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 2.8e-15 85.9 154 35.1
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 3.6e-15 85.5 154 34.4
BraA07t29394Z Brassica rapa HOM05D001905 ORTHO05D001820 6.1e-15 84.7 154 33.8
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 6.1e-15 84.7 160 35.6
Lalb_Chr05g0226301 Lupinus albus HOM05D003452 ORTHO05D004046 6.1e-15 84.7 152 36.2
PSO700G0024 Papaver somniferum HOM05D003452 ORTHO05D004046 6.1e-15 84.7 154 36.4
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 1.0e-14 84.0 159 34.0
FAN26G2566 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.0e-14 84.0 167 32.9
Glyma.17G167900 Glycine max HOM05D003452 ORTHO05D004046 1.0e-14 84.0 152 36.8
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 1.0e-14 84.0 189 34.4
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 1.4e-14 83.6 154 33.1
AUR62003930 Chenopodium quinoa HOM05D003452 ORTHO05D004046 1.4e-14 83.6 179 33.0
Lsat_1_v5_gn_3_90381 Lactuca sativa HOM05D003452 ORTHO05D004046 1.8e-14 83.2 181 33.1
Lj1g0003061 Lotus japonicus HOM05D003452 ORTHO05D004046 1.8e-14 83.2 152 35.5
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 2.3e-14 82.8 160 33.8
Lj5g0005600 Lotus japonicus HOM05D003452 ORTHO05D004046 2.3e-14 82.8 152 35.5
PSO210G3568 Papaver somniferum HOM05D003452 ORTHO05D004046 3.0e-14 82.4 161 35.4
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 4.0e-14 82.0 89 49.4
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 6.8e-14 81.3 152 35.5
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 6.8e-14 81.3 148 35.1
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 6.8e-14 81.3 161 33.5
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 8.9e-14 80.9 160 34.4
Aqoxy2G00584 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 1.2e-13 80.5 154 36.4
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 1.2e-13 80.5 168 34.5
TPR.G34364 Trifolium pratense HOM05D003452 ORTHO05D004046 1.2e-13 80.5 152 33.6
AT3G50100 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.5e-13 80.1 159 34.0
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 2.0e-13 79.7 166 32.5
Actinidia12025 Actinidia chinensis HOM05D003452 ORTHO05D004046 2.6e-13 79.3 123 39.0
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 2.6e-13 79.3 152 35.5
CARHR112890 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.4e-13 79.0 153 35.3
PSO170G4023 Papaver somniferum HOM05D003452 ORTHO05D004046 3.4e-13 79.0 161 34.8
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 4.4e-13 78.6 152 34.2
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 4.4e-13 78.6 152 34.2
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 5.7e-13 78.2 150 35.3
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 5.7e-13 78.2 159 33.3
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 7.5e-13 77.8 154 33.1
Phvul.003G240600 Phaseolus vulgaris HOM05D003452 ORTHO05D004046 7.5e-13 77.8 151 33.8
Medtr1g023955 Medicago truncatula HOM05D003452 ORTHO05D004046 1.3e-12 77.0 152 32.9
Os04g0650600 Oryza sativa ssp. japonica HOM05D003452 ORTHO05D004046 1.3e-12 77.0 154 34.4
AT5G05540 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.7e-12 76.6 150 35.3
Ca_13403_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 1.7e-12 76.6 152 32.9
Lalb_Chr09g0323371 Lupinus albus HOM05D003452 ORTHO05D004046 1.7e-12 76.6 152 36.2
Zm00001eb068290 Zea mays HOM05D003452 ORTHO05D004046 2.8e-12 75.9 148 33.8
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 4.9e-12 75.1 150 33.3
Lsat_1_v5_gn_3_90320 Lactuca sativa HOM05D003452 ORTHO05D004046 6.3e-12 74.7 150 34.7
ATR0006G091 Amborella trichopoda HOM05D003452 ORTHO05D004046 8.3e-12 74.3 152 33.6
Ca_13416_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 1.4e-11 73.6 160 31.2
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.8e-11 73.2 159 32.1
AL5G30220 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 2.4e-11 72.8 159 32.7
Nn1g04732 Nelumbo nucifera HOM05D003452 ORTHO05D004046 2.4e-11 72.8 148 32.4
Gohir.D11G232800 Gossypium hirsutum HOM05D003452 ORTHO05D004046 5.4e-11 71.6 153 34.0
Potri.007G048000 Populus trichocarpa HOM05D003452 ORTHO05D004046 5.4e-11 71.6 153 30.7
Sabra07G0043000 Salix brachista HOM05D003452 ORTHO05D004046 9.2e-11 70.9 153 31.4
Lalb_Chr16g0378691 Lupinus albus HOM05D003452 ORTHO05D004046 2.7e-10 69.3 158 32.3
TAR381G1138 Trochodendron aralioides HOM05D003452 ORTHO05D004046 2.7e-10 69.3 118 38.1
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 4.5e-10 68.6 161 31.1
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 4.5e-10 68.6 161 31.7
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 1.7e-09 66.6 81 44.4
BraA09t39792Z Brassica rapa HOM05D003452 ORTHO05D004046 1.7e-09 66.6 81 44.4
QL05p089247 Quercus lobata HOM05D003452 ORTHO05D004046 3.8e-09 65.5 75 52.0
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 5.0e-09 65.1 161 31.7
BcaB01g00636 Brassica carinata HOM05D003452 ORTHO05D004046 6.6e-09 64.7 101 39.6
Psat6g004200 Pisum sativum HOM05D003452 ORTHO05D004046 6.6e-09 64.7 152 29.6
BraA01t02340Z Brassica rapa HOM05D003452 ORTHO05D004046 1.5e-08 63.5 150 32.0
Nitab4.5_0001238g0020 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.9e-08 63.2 28 100.0
A01p24270 Brassica napus HOM05D003452 ORTHO05D004046 2.5e-08 62.8 144 31.9
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.3e-08 62.4 104 36.5
CARHR239210 Cardamine hirsuta HOM05D003452 ORTHO05D004046 7.3e-08 61.2 156 30.1
PSO384G3646 Papaver somniferum HOM05D003452 ORTHO05D004046 7.3e-08 61.2 81 45.7
FAN26G1073 Fragaria x ananassa HOM05D003452 ORTHO05D004046 9.5e-08 60.8 144 31.2
Thhalv10010950m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.6e-07 60.1 157 28.0
Nitab4.5_0008152g0030 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.6e-07 60.1 49 61.2
CDE10G0659 Ceratophyllum demersum HOM05D003452 ORTHO05D004046 2.1e-07 59.7 113 31.9
BcaC09g50006 Brassica carinata HOM05D003452 ORTHO05D004046 3.6e-07 58.9 150 32.0
C01p30090 Brassica napus HOM05D003452 ORTHO05D004046 4.7e-07 58.5 144 31.9
BolC1t02953H Brassica oleracea HOM05D003452 ORTHO05D004046 4.7e-07 58.5 144 31.9
PSO339G0322 Papaver somniferum HOM05D003452 ORTHO05D004046 4.7e-07 58.5 81 43.2
SEGI_05143 Sequoiadendron giganteum HOM05D003452 ORTHO05D004046 1.4e-06 57.0 82 42.7


User provided reference genes

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