Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 0.0e+00 1417.5 702 100.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 0.0e+00 1343.9 696 95.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 3.9e-296 1021.1 695 74.1
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.4e-277 959.5 695 69.6
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.1e-271 939.9 695 68.6
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.3e-271 938.3 695 68.3
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.7e-267 926.0 695 70.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.7e-241 839.0 694 62.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.2e-238 829.3 696 62.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.2e-201 707.2 704 54.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.4e-197 693.0 694 54.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.1e-194 684.1 709 52.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.7e-193 678.7 715 51.6
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.5e-186 657.1 711 51.8
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 2.8e-185 652.9 722 51.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.4e-184 650.6 715 50.5
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.4e-182 641.7 703 49.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.3e-179 633.3 723 48.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 3.9e-179 632.5 706 49.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.8e-177 626.3 700 50.0
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 7.6e-175 618.2 723 48.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 9.9e-175 617.8 708 48.9
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.7e-174 617.1 708 48.7
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 3.8e-174 615.9 715 47.0
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 4.9e-174 615.5 693 49.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.6e-172 609.0 707 48.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.6e-172 609.0 722 47.0
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 6.0e-172 608.6 718 49.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 7.9e-172 608.2 725 46.5
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.8e-171 607.1 727 48.4
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 9.6e-170 601.3 718 46.1
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.2e-167 594.3 716 47.9
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.6e-167 593.2 724 45.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 7.6e-167 591.7 719 47.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.7e-166 590.5 713 48.0
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.2e-166 590.1 719 47.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.9e-166 589.7 698 47.6
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 3.8e-166 589.3 714 48.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 3.8e-166 589.3 720 46.2
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.9e-166 589.0 710 48.0
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.5e-166 588.6 720 46.2
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.5e-165 586.6 714 47.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.5e-165 586.6 723 49.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.7e-164 583.2 710 44.6
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 4.6e-164 582.4 847 42.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.6e-164 582.4 708 47.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.9e-162 577.0 681 48.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.1e-160 569.7 724 46.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 9.0e-160 568.2 704 46.2
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.0e-159 567.0 718 45.1
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.0e-158 564.7 724 44.8
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.9e-158 563.1 701 46.1
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.9e-157 560.5 712 43.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.5e-157 560.1 715 45.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.1e-156 557.0 706 46.5
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.3e-155 554.3 594 50.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.3e-155 554.3 734 45.6
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.3e-155 554.3 726 43.3
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.3e-154 549.3 732 44.0
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 9.7e-154 548.1 718 45.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.7e-153 547.4 732 44.5
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.7e-153 546.2 732 43.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.7e-153 546.2 707 46.0
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 8.2e-153 545.0 732 44.0
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.4e-152 544.3 730 44.7
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.4e-152 544.3 704 46.4
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 4.1e-152 542.7 707 44.7
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.0e-150 538.1 679 47.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.7e-150 537.3 709 43.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 7.9e-148 528.5 708 43.2
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.3e-147 526.9 683 43.9
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 5.1e-147 525.8 691 42.7
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.2e-145 520.4 744 42.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.5e-143 514.2 704 44.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.2e-142 510.4 701 44.5
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.5e-142 508.8 711 44.0
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.9e-141 507.3 710 41.5
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 4.7e-140 502.7 491 57.4
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 6.3e-137 492.3 725 43.9
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.4e-136 490.3 718 44.0
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 3.1e-136 490.0 720 41.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-134 484.2 752 41.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 6.5e-134 482.3 617 44.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 5.5e-133 479.2 680 43.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 7.2e-133 478.8 406 59.4
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 6.1e-132 475.7 718 42.3
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 7.5e-130 468.8 406 58.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 7.5e-130 468.8 514 50.6
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 9.7e-130 468.4 704 40.2
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.2e-129 467.2 712 42.6
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 5.3e-128 462.6 518 49.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.6e-127 461.1 526 49.0
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-126 458.0 714 41.0
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.6e-124 449.9 686 40.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.4e-122 443.0 701 41.5
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.7e-122 442.6 708 41.1
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.4e-120 436.0 675 41.5
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-119 434.9 703 41.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.9e-119 432.6 719 40.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.3e-118 431.4 718 40.8
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.7e-118 431.0 731 38.7
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.3e-118 430.6 722 40.4
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.8e-118 429.9 721 40.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.8e-116 423.7 676 41.1
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 5.2e-115 419.5 709 38.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.1e-108 397.5 601 40.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-105 388.3 683 38.7
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.2e-105 387.5 467 49.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.2e-105 387.5 682 38.7
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.9e-105 387.1 531 44.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.2e-100 371.7 683 37.5
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.1e-96 358.6 723 34.0
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.9e-96 357.8 686 34.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.0e-94 350.5 299 60.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.3e-91 340.9 369 50.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-90 338.2 503 41.9
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.6e-90 337.4 719 33.8
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.2e-89 334.3 418 46.4
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-87 327.8 513 44.4
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.2e-80 303.9 373 46.4
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.2e-76 292.0 173 80.3
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.1e-72 278.9 717 28.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.1e-71 274.6 367 45.8
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-70 271.9 596 33.6
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.0e-70 270.8 396 41.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.5e-66 258.5 713 30.9
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 6.0e-63 246.5 810 27.5
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-54 218.8 793 25.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.3e-49 202.2 391 35.8
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.4e-43 181.4 163 60.1
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.0e-41 173.7 237 44.7
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.9e-40 171.8 141 58.2
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.6e-39 167.5 230 44.3
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.8e-36 157.9 198 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.1e-35 152.9 750 22.7
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.8e-33 147.5 254 35.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.7e-29 133.7 244 36.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.7e-28 132.1 499 26.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-26 125.6 197 38.6
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-25 122.1 104 57.7
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.4e-24 119.0 104 57.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.0e-22 112.8 148 40.5
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-21 109.0 84 63.1
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.3e-20 103.6 101 53.5
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 5.3e-19 100.5 340 30.9
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.5e-17 93.2 201 29.9
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 9.4e-16 89.7 145 40.0
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.7e-13 79.7 330 23.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.7e-12 77.8 232 31.5
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.7e-12 77.8 94 41.5
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.0e-10 72.0 73 54.8
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.7e-09 68.9 64 56.2
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 7.2e-08 63.5 50 58.0
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.6e-07 62.4 116 35.3
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.7e-07 61.6 45 53.3
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 3.6e-07 61.2 186 28.0
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 6.1e-07 60.5 104 36.5
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.8e-06 58.9 130 34.6
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-06 58.9 50 58.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 5.2e-06 57.4 59 47.5


User provided reference genes

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