Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.4e-77 292.0 134 100.0
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 8.8e-64 246.9 135 85.2
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 9.7e-63 243.4 134 85.8
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 9.7e-63 243.4 134 85.8
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 9.7e-63 243.4 134 85.8
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 9.7e-63 243.4 134 85.8
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 9.7e-63 243.4 134 85.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.0e-59 233.4 134 81.3
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.3e-59 233.0 134 81.3
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.2e-59 232.3 134 80.6
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.9e-59 231.9 134 80.6
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.9e-59 231.9 134 81.3
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 3.8e-59 231.5 134 80.6
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 5.0e-59 231.1 134 80.6
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 5.0e-59 231.1 134 80.6
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 6.5e-59 230.7 134 79.9
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.1e-58 229.9 134 79.9
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.1e-58 229.9 134 80.6
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.5e-58 229.6 134 78.4
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.9e-58 229.2 134 80.6
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.9e-58 229.2 133 79.7
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.5e-58 228.8 134 79.9
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.5e-58 228.8 134 79.1
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 2.5e-58 228.8 134 79.1
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.5e-58 228.8 134 78.4
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 3.2e-58 228.4 134 79.9
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 4.2e-58 228.0 134 79.1
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 4.2e-58 228.0 134 79.9
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 5.5e-58 227.6 134 78.4
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 5.5e-58 227.6 134 79.1
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 5.5e-58 227.6 134 78.4
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 7.2e-58 227.3 134 79.9
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 7.2e-58 227.3 134 79.1
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 9.4e-58 226.9 134 79.1
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.2e-57 226.5 134 77.6
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.2e-57 226.5 134 79.9
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.2e-57 226.5 134 78.4
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.6e-57 226.1 134 78.4
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.6e-57 226.1 134 78.4
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.6e-57 226.1 134 78.4
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.6e-57 226.1 134 78.4
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.6e-57 226.1 134 78.4
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 2.1e-57 225.7 134 77.6
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 2.7e-57 225.3 134 78.4
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 3.6e-57 224.9 134 76.9
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 6.1e-57 224.2 134 78.4
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 8.0e-57 223.8 134 77.6
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.0e-57 223.8 134 77.6
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 8.0e-57 223.8 134 77.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 8.0e-57 223.8 134 77.6
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.0e-56 223.4 134 76.9
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.0e-56 223.4 134 77.6
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.4e-56 223.0 134 76.1
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.4e-56 223.0 134 76.9
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.4e-56 223.0 134 78.4
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.8e-56 222.6 134 78.4
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.8e-56 222.6 134 76.1
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.3e-56 222.2 133 76.7
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 2.3e-56 222.2 134 75.4
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.0e-56 221.9 134 76.1
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.0e-56 221.9 134 76.9
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.0e-56 221.9 134 76.9
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.0e-56 221.5 134 75.4
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 6.8e-56 220.7 134 74.6
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 6.8e-56 220.7 134 74.6
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 6.8e-56 220.7 134 74.6
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 8.8e-56 220.3 134 74.6
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 8.8e-56 220.3 134 76.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.5e-55 219.5 134 75.4
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.5e-55 219.5 134 76.1
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.0e-55 219.2 134 74.6
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 2.6e-55 218.8 134 76.1
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 2.6e-55 218.8 134 76.9
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.4e-55 218.4 134 73.9
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.4e-55 218.4 134 73.9
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 3.4e-55 218.4 134 74.6
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 3.4e-55 218.4 134 73.9
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.4e-55 218.4 134 75.4
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 5.7e-55 217.6 134 73.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 5.7e-55 217.6 134 73.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 5.7e-55 217.6 134 73.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 5.7e-55 217.6 134 73.1
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.3e-54 216.5 134 73.1
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.3e-54 216.5 134 74.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.7e-54 216.1 134 74.6
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.8e-54 215.3 134 75.4
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.8e-54 215.3 134 73.1
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.7e-54 214.9 134 71.6
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 4.8e-54 214.5 134 73.9
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 6.3e-54 214.2 134 73.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-53 213.4 134 73.1
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.4e-53 213.0 131 78.6
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.4e-53 213.0 134 74.6
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.2e-52 209.9 134 72.4
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.6e-52 209.5 134 69.4
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 3.5e-52 208.4 124 79.0
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.9e-51 205.3 131 74.0
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.9e-51 205.3 131 74.0
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.9e-50 202.6 134 68.7
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.2e-50 201.8 124 75.8
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.2e-50 201.8 124 75.8
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.7e-49 198.7 133 68.4
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 4.7e-49 198.0 124 72.6
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 4.7e-49 198.0 131 71.0
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.4e-48 196.4 132 68.2
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.4e-48 196.4 132 68.2
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.8e-48 196.1 124 73.4
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.3e-48 195.7 124 71.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 4.0e-48 194.9 124 71.0
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 5.2e-48 194.5 130 69.2
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 8.8e-48 193.7 134 67.2
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.3e-46 189.9 134 64.2
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.9e-46 188.0 133 62.4
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 6.3e-46 187.6 131 64.9
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 8.3e-46 187.2 131 64.9
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 8.3e-46 187.2 131 64.9
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.4e-45 185.7 180 56.1
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.4e-45 185.7 134 63.4
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 3.1e-45 185.3 117 76.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 3.1e-45 185.3 134 64.9
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.6e-43 177.6 133 60.2
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 6.6e-43 177.6 134 60.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.5e-42 175.6 134 60.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.7e-41 171.4 133 58.6
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 6.1e-41 171.0 81 93.8
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 8.0e-41 170.6 249 39.8
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.8e-40 167.5 93 79.6
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.2e-39 166.8 92 81.5
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.5e-39 166.4 134 61.9
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.3e-38 163.3 86 83.7
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.3e-38 163.3 134 52.2
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.3e-38 163.3 107 73.8
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 4.9e-38 161.4 83 84.3
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.1e-37 160.2 133 59.4
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 9.2e-37 157.1 79 86.1
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 9.2e-37 157.1 81 81.5
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 1.6e-36 156.4 107 71.0
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.0e-36 156.0 107 71.0
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.7e-36 155.6 80 85.0
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 4.6e-36 154.8 80 81.2
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 7.8e-36 154.1 80 82.5
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.0e-35 153.7 83 78.3
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.3e-35 153.3 113 67.3
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.6e-35 151.0 81 84.0
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.5e-34 149.8 83 78.3
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.7e-30 136.3 96 69.8
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.1e-29 133.7 129 49.6
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.3e-27 126.7 130 44.6
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.1e-25 119.4 64 82.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.3e-24 115.9 123 48.8
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 6.4e-22 107.8 71 67.6
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.1e-21 105.1 80 61.2
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.6e-20 101.7 56 80.4
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 6.0e-20 101.3 130 40.0
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.3e-19 100.1 81 63.0
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.3e-18 95.5 130 41.5
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 5.6e-18 94.7 116 41.4
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.8e-15 84.7 135 34.8
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 9.9e-15 84.0 53 73.6
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 8.4e-14 80.9 67 59.7
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 4.1e-13 78.6 93 38.7
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.6e-12 75.1 122 33.6
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.3e-10 68.6 37 81.1
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 2.8e-09 65.9 124 31.5
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.5e-07 60.1 131 27.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.6e-07 59.3 131 26.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.2e-06 56.2 47 46.8
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 4.9e-06 55.1 132 24.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 6.4e-06 54.7 134 27.6
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.4e-06 54.3 45 46.7


User provided reference genes

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