Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.1e-160 568.9 282 100.0
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.7e-120 435.3 235 91.9
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.6e-97 359.4 232 75.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 5.4e-87 325.1 181 82.3
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 5.4e-79 298.5 235 65.1
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 5.2e-74 282.0 235 63.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 5.8e-65 251.9 237 55.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 3.4e-57 226.1 234 52.1
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 7.5e-57 224.9 229 54.1
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.3e-56 224.2 277 49.8
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.7e-56 223.8 253 50.6
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 4.9e-56 222.2 244 50.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 5.4e-55 218.8 225 52.9
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 3.5e-54 216.1 275 48.4
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.3e-53 213.4 245 48.6
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 8.1e-51 204.9 242 47.5
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.6e-49 199.9 137 64.2
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 5.8e-49 198.7 182 52.7
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 7.6e-49 198.4 268 44.4
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.3e-48 197.6 240 47.1
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 4.9e-48 195.7 228 48.2
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 4.6e-46 189.1 217 47.0
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 2.3e-45 186.8 227 47.6
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 3.0e-45 186.4 188 50.0
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 5.1e-45 185.7 131 61.8
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 6.6e-45 185.3 195 50.3
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.6e-43 179.5 206 46.6
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 4.7e-43 179.1 233 46.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 1.1e-42 177.9 227 46.3
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 2.4e-42 176.8 173 53.8
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 3.1e-42 176.4 225 44.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.2e-41 174.5 237 43.5
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.7e-40 170.6 233 44.2
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 3.8e-40 169.5 211 41.2
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.8e-40 169.5 244 40.6
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 4.2e-39 166.0 233 43.3
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 5.4e-39 165.6 231 43.3
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 9.3e-39 164.9 238 41.2
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.2e-38 164.5 237 41.8
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.1e-38 163.7 230 44.3
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.7e-38 163.3 252 39.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.3e-37 161.0 233 43.3
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.3e-37 161.0 233 43.3
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.3e-37 161.0 231 43.7
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.3e-37 161.0 110 63.6
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 3.0e-37 159.8 233 43.8
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.0e-37 159.8 233 43.8
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 6.6e-37 158.7 180 49.4
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 3.3e-36 156.4 225 41.3
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.8e-35 153.3 258 41.5
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.1e-34 149.8 222 40.5
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.9e-31 140.6 238 40.3
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.2e-31 139.8 236 40.7
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.0e-29 134.8 286 32.2
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.8e-27 126.7 187 38.0
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 6.2e-27 125.6 257 34.6
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 3.4e-25 119.8 148 39.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 4.6e-22 109.4 135 41.5
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 7.9e-22 108.6 147 42.2
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 3.0e-21 106.7 180 39.4
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.5e-20 104.4 125 40.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.9e-20 104.0 125 40.0
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.3e-20 103.2 131 38.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.6e-20 101.7 138 36.2
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-19 101.3 65 66.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-19 101.3 65 66.2
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.1e-19 100.5 138 35.5
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-18 98.2 116 39.7
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.4e-18 97.8 97 46.4
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.4e-18 97.8 138 34.8
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.8e-18 97.4 116 39.7
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 1.8e-18 97.4 116 39.7
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.8e-18 97.4 116 39.7
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 1.8e-18 97.4 198 39.4
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 3.1e-18 96.7 137 40.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 6.9e-18 95.5 143 36.4
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.0e-17 94.0 131 33.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.0e-17 94.0 131 39.7
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.4e-17 93.2 132 35.6
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 4.5e-17 92.8 134 33.6
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 4.5e-17 92.8 137 34.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.9e-16 90.1 126 38.9
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.9e-16 90.1 107 41.1
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 3.8e-16 89.7 135 34.1
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.9e-16 89.4 140 31.4
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 6.5e-16 89.0 107 41.1
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 6.5e-16 89.0 172 33.1
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 8.4e-16 88.6 156 32.1
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 8.4e-16 88.6 138 34.8
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.1e-15 88.2 156 32.1
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.9e-15 87.4 129 38.0
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.9e-15 87.4 129 39.5
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.5e-15 87.0 131 38.2
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.2e-15 86.3 138 33.3
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 5.5e-15 85.9 129 37.2
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 5.5e-15 85.9 129 37.2
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 5.5e-15 85.9 127 35.4
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 7.1e-15 85.5 129 37.2
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.2e-14 84.7 131 33.6
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.2e-14 84.7 152 32.9
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 1.2e-14 84.7 107 38.3
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.2e-14 84.7 132 33.3
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.6e-14 84.3 97 42.3
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.6e-14 84.3 107 38.3
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 2.1e-14 84.0 107 38.3
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.7e-14 83.6 130 36.9
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 4.6e-14 82.8 136 34.6
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.3e-13 80.5 130 31.5
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 3.0e-13 80.1 163 28.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 3.0e-13 80.1 137 31.4
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.5e-12 77.0 84 41.7
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.5e-12 77.0 139 34.5
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.5e-12 77.0 125 35.2
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 4.3e-12 76.3 84 38.1
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 5.7e-12 75.9 134 31.3
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.1e-10 71.6 153 26.8
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 9.0e-10 68.6 178 26.4
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 9.0e-10 68.6 171 26.9
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 9.0e-10 68.6 129 31.8
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.5e-09 67.8 139 33.8
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.0e-09 67.4 153 28.1
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 2.0e-09 67.4 160 36.9
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 3.4e-09 66.6 95 33.7
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 4.5e-09 66.2 137 27.7
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 7.6e-09 65.5 147 27.9
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.2e-08 63.9 138 26.8
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.2e-08 63.9 138 26.8
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 2.2e-08 63.9 119 33.6
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 2.9e-08 63.5 58 44.8
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 6.5e-08 62.4 115 33.9
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.1e-07 61.6 119 35.3
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 4.2e-07 59.7 144 28.5
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 4.2e-07 59.7 119 34.5
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.2e-07 59.7 56 48.2
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 5.5e-07 59.3 108 36.1
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 5.5e-07 59.3 110 30.9
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 9.3e-07 58.5 111 33.3
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 9.3e-07 58.5 113 36.3
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 9.3e-07 58.5 138 32.6
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.3e-07 58.5 46 52.2
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 9.3e-07 58.5 160 29.4
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 9.3e-07 58.5 103 36.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 1.6e-06 57.8 110 33.6
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 1.6e-06 57.8 144 28.5
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 2.1e-06 57.4 97 38.1
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 2.1e-06 57.4 128 33.6
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 2.1e-06 57.4 117 32.5
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 2.7e-06 57.0 113 35.4
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 2.7e-06 57.0 97 34.0
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.7e-06 57.0 50 50.0
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 2.7e-06 57.0 122 32.0
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.5e-06 56.6 56 44.6
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 3.5e-06 56.6 188 30.9
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 3.5e-06 56.6 112 33.0
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 4.6e-06 56.2 89 37.1
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 4.6e-06 56.2 180 28.3
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.6e-06 56.2 56 44.6
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 4.6e-06 56.2 111 34.2
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 6.1e-06 55.8 134 30.6
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 6.1e-06 55.8 106 36.8
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.1e-06 55.8 47 46.8
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 6.1e-06 55.8 94 30.9
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 7.9e-06 55.5 72 40.3
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 7.9e-06 55.5 145 29.0
Sopen01g040770 Solanum pennellii HOM05D000002 ORTHO05D000001 7.9e-06 55.5 64 53.1


User provided reference genes

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