Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 2109.3 1074 100.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1849.3 1057 91.6
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1689.1 1229 74.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1656.7 1378 68.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1655.2 1378 68.2
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1645.6 1379 67.7
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1512.7 1290 66.7
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1503.4 1379 61.3
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1480.3 1377 60.9
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1470.7 1370 60.9
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1458.4 1369 60.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1451.8 1388 59.1
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1451.0 1369 59.6
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1448.7 1371 60.0
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1444.5 1376 60.0
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1436.8 1377 59.2
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1433.3 1376 58.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1431.8 1371 59.2
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1431.8 1379 58.7
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1430.6 1274 62.6
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1423.7 1390 57.5
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1418.7 1372 57.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1415.6 1378 57.8
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1414.4 1380 57.9
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1410.6 1403 57.1
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1406.0 1378 58.0
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1405.6 1377 58.0
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1401.7 1376 57.6
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1400.6 1377 57.7
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1394.0 1370 57.7
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1392.9 1378 58.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1389.4 1378 57.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1387.1 1442 55.5
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1383.6 1305 60.2
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1377.8 1370 56.7
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1376.3 1378 56.7
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1375.5 1370 56.6
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1375.5 1370 56.6
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1372.5 1423 55.2
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1369.8 1365 56.9
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1369.0 1373 57.0
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1368.2 1387 55.9
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1367.4 1349 58.3
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1366.7 1370 56.2
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1362.8 1370 56.4
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1361.3 1368 56.9
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1359.4 1361 56.6
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1357.4 1375 56.5
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1357.0 1387 55.4
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1356.3 1393 55.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1354.3 1377 55.8
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1353.2 1365 56.1
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1352.8 1376 56.2
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1348.2 1392 55.2
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1343.6 1357 56.6
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1341.3 1376 55.7
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1339.7 1374 55.9
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1338.2 1392 55.0
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1333.9 1388 54.5
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1328.9 1374 56.1
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1327.8 1374 55.2
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1327.8 1374 55.1
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1324.7 1371 55.1
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1316.6 1360 55.1
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1315.4 1374 55.2
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1314.3 1365 54.1
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1311.6 1300 57.2
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1311.2 1050 67.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1303.9 1360 55.1
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1297.0 1318 56.5
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1295.4 1373 54.4
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1280.0 1371 53.0
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1280.0 1425 52.6
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1279.2 1362 53.5
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1278.5 1308 56.3
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1274.6 1345 54.5
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1271.5 1363 53.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1271.1 1372 52.8
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1258.4 1364 52.7
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1258.4 1360 52.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1255.7 1359 53.2
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1252.7 1363 52.4
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1252.3 1375 52.9
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1252.3 1370 52.8
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1248.0 1375 52.1
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1242.3 1356 52.9
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1241.9 1356 52.9
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1238.4 1033 65.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1236.1 1382 52.0
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1233.8 1366 52.5
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1226.8 1362 52.3
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1221.5 1357 51.8
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1219.1 1358 52.1
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1218.0 1351 52.3
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1216.8 1368 51.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1213.0 1366 51.8
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1209.9 1364 52.0
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1209.1 1367 51.6
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1208.7 1371 51.5
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1206.4 1360 51.7
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1205.3 1360 51.4
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1187.9 1400 50.6
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1163.7 1381 50.1
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1160.2 1338 50.7
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1143.3 1304 51.8
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1119.0 1359 48.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1103.2 1364 47.6
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1078.5 1252 53.4
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1075.1 1374 46.5
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 1.3e-298 1030.0 1032 56.8
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.5e-294 1016.5 869 62.7
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-290 1003.4 1003 59.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 4.7e-277 958.4 1394 42.3
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 4.0e-276 955.3 993 52.7
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.4e-275 952.2 1400 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 8.2e-245 851.3 1049 46.9
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 4.2e-233 812.4 718 65.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.4e-228 796.6 738 61.9
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.8e-223 778.1 769 58.6
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.3e-220 768.8 838 50.8
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.5e-182 644.4 701 52.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 3.4e-166 590.1 593 53.6
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 2.2e-149 534.3 489 60.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.5e-137 494.2 768 41.3
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 5.5e-132 476.5 378 66.9
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 6.7e-114 416.4 742 38.1
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.1e-111 407.1 594 43.3
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.2e-110 405.6 402 54.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.9e-100 371.7 316 62.3
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.7e-96 357.5 472 43.9
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.6e-83 315.5 429 48.7
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 8.9e-74 283.1 480 39.2
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 6.0e-70 270.4 150 82.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 8.9e-58 229.9 174 70.7
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-55 223.0 275 50.2
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.5e-44 185.3 145 66.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.1e-42 179.9 190 52.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 4.2e-39 167.9 1071 23.3
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.8e-34 152.5 149 55.0
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 3.4e-33 148.3 127 59.1
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.9e-32 145.2 120 59.2
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 3.8e-32 144.8 121 62.0
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.0e-29 136.7 339 33.0
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 6.2e-27 127.5 1073 20.6
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.6e-25 122.1 79 73.4
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 5.5e-23 114.4 152 51.3
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 3.9e-21 108.2 101 56.4
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 6.7e-21 107.5 155 38.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.2e-16 92.4 70 65.7
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-15 90.1 114 49.1
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.3e-13 82.4 48 75.0
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 9.7e-12 77.0 298 26.2
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 2.0e-09 69.3 40 85.0
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 5.9e-09 67.8 45 73.3
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 8.5e-08 63.9 47 74.5
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.9e-07 62.8 36 83.3
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.2e-07 60.8 177 27.1
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.6e-06 59.7 146 27.4
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 7.9e-06 57.4 34 73.5


User provided reference genes

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