Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1287.3 645 100.0
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1254.6 645 97.1
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1178.7 645 90.7
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1178.3 645 90.9
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1172.9 640 90.3
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1151.3 643 88.5
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 7.7e-299 1030.0 641 78.3
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-291 1005.0 641 76.8
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 2.2e-290 1001.9 645 76.6
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-285 985.7 641 74.7
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 5.4e-284 980.7 645 74.0
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 7.0e-284 980.3 641 73.8
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 4.5e-283 977.6 641 73.6
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 2.9e-282 974.9 645 74.0
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 1.9e-281 972.2 645 73.3
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 2.5e-281 971.8 641 73.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 1.3e-277 959.5 645 72.7
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 1.1e-276 956.4 645 73.2
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 3.2e-276 954.9 645 72.4
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 7.0e-276 953.7 645 72.4
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 1.0e-274 949.9 645 72.6
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.3e-274 949.5 641 71.9
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 3.3e-273 944.9 639 72.6
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 2.8e-272 941.8 644 72.0
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 4.7e-272 941.0 637 72.1
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 8.0e-272 940.3 645 71.6
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.4e-271 939.5 645 71.8
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 3.1e-271 938.3 645 70.7
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 2.6e-270 935.3 641 72.1
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 3.4e-270 934.9 645 71.5
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 2.2e-269 932.2 646 71.2
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 1.9e-268 929.1 641 71.1
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 4.1e-268 927.9 642 70.2
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 9.2e-268 926.8 645 71.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 2.7e-267 925.2 644 71.1
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 1.7e-266 922.5 622 73.8
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 6.6e-266 920.6 645 70.4
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 1.5e-265 919.5 647 70.2
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 2.8e-264 915.2 645 69.9
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 2.3e-263 912.1 641 70.0
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 4.0e-263 911.4 645 69.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 1.2e-262 909.8 641 69.9
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 5.8e-262 907.5 642 69.0
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 9.8e-262 906.7 645 69.5
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 9.8e-262 906.7 641 69.7
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 3.7e-261 904.8 649 68.7
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 1.4e-260 902.9 645 69.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.4e-260 902.9 641 69.6
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 7.1e-260 900.6 644 69.4
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 1.3e-258 896.3 644 68.6
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 2.3e-258 895.6 644 68.8
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 3.9e-258 894.8 644 69.1
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 1.5e-257 892.9 641 68.6
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 9.5e-257 890.2 641 69.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 1.6e-256 889.4 644 68.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 4.7e-256 887.9 644 68.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 3.1e-255 885.2 650 69.2
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 4.0e-255 884.8 644 68.2
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 5.2e-255 884.4 645 68.2
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 6.8e-255 884.0 644 68.3
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 8.9e-255 883.6 644 67.9
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.2e-254 883.2 647 67.9
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 1.5e-254 882.9 644 68.2
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 2.6e-254 882.1 651 67.6
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.6e-254 882.1 644 67.7
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 3.4e-254 881.7 672 64.7
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 5.8e-254 880.9 642 67.4
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 9.9e-254 880.2 644 68.3
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 1.1e-252 876.7 651 67.1
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 1.2e-251 873.2 653 66.8
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.6e-251 871.3 645 67.4
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 6.0e-251 870.9 642 66.7
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 3.0e-250 868.6 657 66.2
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 3.0e-250 868.6 640 67.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 4.3e-249 864.8 610 69.2
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 5.6e-249 864.4 645 67.6
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 9.6e-249 863.6 640 66.7
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 1.2e-248 863.2 673 65.2
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 8.1e-248 860.5 641 66.8
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 1.5e-246 856.3 653 64.8
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 7.6e-246 854.0 682 63.9
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 7.1e-244 847.4 640 66.4
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.3e-241 838.2 645 66.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.4e-239 832.4 634 64.5
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 6.9e-239 830.9 648 65.1
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 2.9e-237 825.5 724 59.4
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.1e-233 813.5 645 63.1
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 2.0e-230 802.7 642 61.1
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 1.7e-229 799.7 622 63.5
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 4.3e-225 785.0 645 62.2
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 4.8e-224 781.6 601 64.6
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 3.2e-220 768.8 717 56.8
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 4.8e-216 755.0 579 64.4
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.2e-213 746.1 483 76.2
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.5e-212 742.7 548 68.6
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 1.1e-209 733.8 650 58.0
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 3.3e-209 732.3 484 74.2
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 4.1e-207 725.3 499 71.7
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.7e-200 703.4 539 66.6
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-197 692.6 547 64.9
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 2.3e-173 613.2 641 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 2.0e-169 600.1 649 49.3
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 4.4e-161 572.4 644 49.7
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 7.5e-161 571.6 472 62.3
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 6.2e-155 552.0 651 47.0
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.1e-154 549.7 405 69.1
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 8.9e-154 548.1 476 57.4
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.9e-133 479.6 303 76.2
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.4e-130 471.1 655 41.7
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.0e-125 454.9 319 69.9
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.7e-118 430.3 389 55.5
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 7.9e-94 349.0 245 70.2
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.6e-78 297.0 208 68.3
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.7e-76 289.7 204 70.1
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.5e-72 275.8 233 61.8
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 8.5e-72 275.8 297 49.2
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.3e-67 261.9 656 31.4
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.4e-58 231.9 160 71.2
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-56 225.7 182 64.3
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.0e-50 203.0 194 58.2
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.9e-43 181.0 144 63.2
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.2e-35 154.8 170 48.2
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.7e-33 147.9 156 51.3
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.5e-31 142.1 107 69.2
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-29 136.0 98 66.3
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-29 134.8 94 68.1
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 2.6e-28 131.3 73 86.3
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.3e-27 129.0 90 67.8
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 9.5e-23 112.8 99 55.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 1.1e-18 99.4 165 39.4
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.4e-18 97.1 111 49.5
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.1e-16 90.5 94 50.0
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.4e-13 82.4 210 30.5
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 5.3e-13 80.5 74 58.1
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 6.4e-11 73.6 51 66.7
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 2.7e-09 68.2 51 62.7
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-07 62.0 41 70.7
SGA_v2.0_scaffold7G03828 Striga asiatica HOM05D016705 ORTHO05D004689 5.6e-07 60.5 103 37.9
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.6e-07 59.7 50 56.0
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.3e-06 59.3 36 80.6


User provided reference genes

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