Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.6e-269 930.6 469 100.0
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 8.5e-247 856.7 453 95.8
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 4.3e-214 748.0 491 78.4
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 5.6e-214 747.7 492 79.3
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 3.6e-205 718.4 499 76.0
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 4.3e-158 562.0 463 68.0
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 9.4e-129 464.5 499 51.3
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 8.8e-119 431.4 505 50.7
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 7.7e-115 418.3 547 45.0
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.2e-114 416.8 504 48.0
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 5.0e-114 415.6 494 49.2
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 8.5e-114 414.8 522 46.9
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 5.5e-113 412.1 279 78.5
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 4.0e-111 406.0 497 49.3
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 9.8e-110 401.4 461 50.3
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.7e-109 400.6 508 46.1
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 4.8e-109 399.1 489 47.2
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 8.3e-109 398.3 494 46.0
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 7.7e-107 391.7 496 45.0
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.7e-106 390.6 493 46.5
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 5.0e-106 389.0 503 45.5
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.9e-105 387.1 461 49.9
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 4.2e-105 386.0 498 45.0
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 5.5e-105 385.6 492 47.0
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.2e-104 384.4 498 45.6
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 2.1e-104 383.6 439 50.3
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 6.1e-104 382.1 491 45.8
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 8.9e-103 378.3 521 43.8
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 2.6e-102 376.7 504 45.6
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 4.4e-102 375.9 504 46.0
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 9.8e-102 374.8 493 46.9
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 2.2e-101 373.6 495 45.9
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 4.9e-101 372.5 465 46.2
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 8.3e-101 371.7 495 44.6
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.2e-100 369.8 495 45.7
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 3.2e-100 369.8 493 45.2
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 5.4e-100 369.0 495 44.4
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 5.4e-100 369.0 507 44.0
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 7.0e-100 368.6 492 46.1
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 9.2e-100 368.2 515 45.8
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 2.0e-99 367.1 491 45.0
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 3.5e-99 366.3 499 44.9
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.7e-98 364.0 500 46.2
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 2.3e-98 363.6 498 45.0
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 2.9e-98 363.2 491 45.8
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 5.0e-98 362.5 498 43.8
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 8.6e-98 361.7 502 43.4
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 3.3e-97 359.8 460 46.7
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 4.3e-97 359.4 494 43.7
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 4.3e-97 359.4 491 45.8
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 8.0e-96 355.1 512 43.2
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.0e-95 354.8 632 37.5
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 2.3e-95 353.6 474 43.5
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 6.8e-95 352.1 492 44.1
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 5.8e-94 349.0 469 44.8
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 5.8e-94 349.0 496 43.5
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 4.1e-92 342.8 468 43.2
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.7e-91 340.1 501 42.1
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.0e-90 338.2 492 43.3
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 2.3e-90 337.0 498 42.2
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 3.9e-90 336.3 500 41.8
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 5.0e-90 335.9 538 41.4
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.2e-88 331.3 495 42.4
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 3.6e-88 329.7 439 44.9
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 8.0e-88 328.6 490 43.1
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 6.8e-87 325.5 509 41.3
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 6.8e-87 325.5 494 40.9
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 1.2e-86 324.7 497 43.3
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 2.0e-86 323.9 505 42.2
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 2.6e-86 323.6 512 41.6
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 3.4e-86 323.2 498 43.6
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 1.3e-85 321.2 494 40.1
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 3.7e-85 319.7 496 42.5
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 2.4e-84 317.0 435 43.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.0e-82 310.1 656 36.6
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 3.3e-81 306.6 497 38.6
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 3.3e-81 306.6 495 39.8
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.2e-80 304.7 498 40.2
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 6.2e-80 302.4 514 39.5
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 6.4e-77 292.4 437 42.3
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 1.9e-76 290.8 466 38.8
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 2.4e-76 290.4 427 43.6
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 4.7e-72 276.2 505 38.2
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.1e-71 275.0 502 36.7
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 1.8e-71 274.2 498 36.9
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 2.4e-71 273.9 498 36.7
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 5.2e-71 272.7 487 37.2
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 5.8e-70 269.2 498 37.3
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 6.4e-69 265.8 493 35.5
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 4.2e-68 263.1 498 35.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 9.3e-68 261.9 508 35.8
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 9.3e-68 261.9 508 35.8
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 7.8e-67 258.8 385 41.3
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.9e-65 254.2 385 41.0
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 3.6e-64 250.0 334 41.3
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 1.2e-59 235.0 500 36.6
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 2.7e-59 233.8 208 56.7
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 3.4e-54 216.9 343 39.4
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.7e-53 214.5 355 40.0
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 5.4e-52 209.5 192 54.7
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 2.7e-51 207.2 355 39.7
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 2.4e-47 194.1 211 52.1
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 4.0e-47 193.4 457 33.9
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 4.2e-44 183.3 350 37.4
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.7e-37 161.4 148 56.8
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.7e-37 161.4 148 56.8
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 2.3e-34 151.0 341 30.2
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.5e-33 147.5 119 61.3
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 5.7e-33 146.4 118 60.2
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 9.7e-33 145.6 144 53.5
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 9.7e-33 145.6 119 60.5
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 2.2e-32 144.4 494 26.9
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 9.7e-17 92.4 239 38.5
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.7e-16 90.5 65 67.7
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 4.5e-14 83.6 184 29.9
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 3.3e-09 67.4 164 35.4


User provided reference genes

Program Settings