Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 0.0e+00 1106.7 569 100.0
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-271 939.1 632 79.1
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.9e-265 917.5 683 73.6
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.5e-229 799.7 664 67.0
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.4e-227 793.1 663 66.1
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 7.7e-218 760.8 666 64.4
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 4.9e-172 608.6 611 57.9
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 4.9e-156 555.4 704 48.7
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 8.7e-153 544.7 660 49.7
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.9e-147 526.9 645 49.6
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.2e-147 526.2 661 48.1
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 6.0e-146 521.9 664 46.2
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.5e-144 517.3 666 47.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 5.3e-142 508.8 665 46.6
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 3.4e-141 506.1 669 46.8
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.4e-141 506.1 642 47.7
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 6.7e-137 491.9 640 47.2
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 6.2e-135 485.3 764 42.1
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 5.3e-134 482.3 666 45.8
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.3e-134 482.3 627 46.4
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 7.1e-131 471.9 634 46.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 9.3e-131 471.5 717 40.7
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 3.0e-129 466.5 712 42.4
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 6.7e-129 465.3 717 40.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.9e-128 463.8 718 42.8
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 4.3e-128 462.6 714 42.0
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 9.7e-128 461.5 698 43.0
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 1.6e-127 460.7 345 71.9
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.8e-126 457.2 668 43.3
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 9.0e-126 454.9 662 43.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.2e-124 450.3 730 42.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 5.0e-124 449.1 708 40.5
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.9e-123 447.2 720 40.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.5e-123 446.8 666 44.3
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 3.2e-123 446.4 663 42.7
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 7.9e-122 441.8 674 42.0
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.3e-121 440.3 641 44.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 3.0e-121 439.9 641 44.8
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 8.8e-121 438.3 659 41.6
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 8.8e-121 438.3 713 41.0
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.9e-120 437.2 742 38.8
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.5e-120 436.8 473 54.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 4.3e-120 436.0 701 42.7
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.3e-119 434.5 711 39.8
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.3e-118 429.1 704 41.9
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 5.3e-118 429.1 724 39.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 6.9e-118 428.7 715 41.1
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 9.1e-118 428.3 710 40.4
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.2e-117 427.9 717 39.1
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 5.9e-117 425.6 751 38.9
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.0e-116 424.9 700 39.9
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.2e-116 423.7 650 43.1
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.9e-116 423.3 715 41.3
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.8e-116 422.9 805 38.3
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.2e-115 419.9 647 42.5
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.2e-114 417.9 717 39.9
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.1e-114 417.2 677 42.1
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.6e-114 416.4 759 38.5
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-111 407.9 643 42.5
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 2.8e-111 406.8 709 38.5
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 6.3e-111 405.6 700 39.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 3.1e-110 403.3 662 40.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 2.9e-108 396.7 709 39.8
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 8.5e-108 395.2 703 39.7
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.1e-107 394.8 725 37.8
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 7.2e-107 392.1 707 36.8
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 3.6e-106 389.8 699 40.1
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.1e-104 384.8 724 38.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.5e-104 384.4 714 38.8
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 7.4e-104 382.1 491 48.9
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.7e-103 380.9 643 40.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 3.1e-102 376.7 671 38.9
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 9.1e-102 375.2 664 38.7
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 4.5e-101 372.9 697 37.9
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.5e-101 372.9 697 37.9
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 7.7e-101 372.1 665 39.4
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.3e-100 371.3 735 35.0
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 2.5e-99 367.1 730 36.0
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 3.6e-98 363.2 668 37.4
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 8.0e-98 362.1 613 40.8
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.8e-97 358.6 697 37.7
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.8e-95 353.6 734 34.3
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 1.4e-94 351.3 543 43.1
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 9.1e-94 348.6 736 33.4
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.3e-92 344.7 683 37.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.5e-91 341.3 733 33.2
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.9e-91 340.9 719 34.2
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.9e-91 340.9 646 37.2
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 8.0e-90 335.5 663 37.3
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 4.8e-87 326.2 757 32.8
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 7.7e-85 318.9 639 34.9
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.9e-83 314.3 661 35.6
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.2e-82 311.6 674 35.6
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.6e-82 311.2 857 30.3
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.2e-80 305.1 764 33.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 2.2e-79 300.8 643 35.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.7e-77 293.9 676 35.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.0e-73 280.4 616 36.0
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 2.1e-66 257.7 832 27.9
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 4.7e-66 256.5 872 27.8
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 8.0e-66 255.8 853 27.8
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.5e-64 251.5 839 28.0
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 7.5e-64 249.2 719 31.3
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.6e-60 236.1 814 28.3
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 9.5e-59 232.3 466 36.9
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 4.7e-58 229.9 201 57.2
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 9.9e-56 222.2 580 33.1
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 9.2e-54 215.7 649 27.9
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 4.3e-51 206.8 644 28.4
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 7.3e-51 206.1 599 31.6
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 3.1e-49 200.7 678 27.0
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.1e-43 182.2 556 31.1
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.5e-40 171.8 126 67.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.1e-38 165.6 575 27.8
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.5e-37 160.6 103 78.6
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.0e-36 159.1 135 65.9
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 2.5e-35 154.5 716 24.9
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.4e-33 147.9 180 45.6
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.8e-32 143.3 277 37.2
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.5e-27 128.6 360 31.4
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.3e-27 127.1 82 75.6
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.1e-22 112.5 642 23.1
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 3.0e-20 104.4 147 36.1
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 3.0e-20 104.4 135 40.7
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.8e-15 87.4 250 32.8
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.9e-14 85.1 425 25.2
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 3.2e-14 84.3 123 40.7
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.6e-13 82.0 71 53.5
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.6e-13 82.0 71 53.5
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 4.6e-13 80.5 113 40.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.0e-08 65.1 153 34.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 2.0e-08 65.1 55 56.4


User provided reference genes

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