Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.7e-62 240.0 121 100.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.3e-55 218.8 123 91.1
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.2e-55 217.6 123 90.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.1e-52 209.9 123 86.2
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.1e-52 209.9 123 86.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-52 209.5 121 88.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.4e-52 208.8 119 87.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 3.1e-52 208.4 122 85.2
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.1e-52 208.4 123 84.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.3e-52 207.6 119 87.4
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 5.3e-52 207.6 119 84.9
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.0e-52 207.2 119 86.6
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 7.0e-52 207.2 119 86.6
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 9.1e-52 206.8 119 86.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.1e-52 206.8 121 82.6
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.0e-51 205.7 121 84.3
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.0e-51 205.7 119 85.7
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.0e-51 205.7 119 85.7
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.0e-51 205.7 122 83.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.7e-51 205.3 118 86.4
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.7e-51 205.3 121 84.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.5e-51 204.9 117 85.5
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 4.5e-51 204.5 119 84.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.5e-51 204.5 118 85.6
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 5.9e-51 204.1 120 83.3
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.0e-50 203.4 119 83.2
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.0e-50 203.4 119 83.2
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.2e-50 202.2 118 83.9
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.2e-50 202.2 118 85.6
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.2e-50 202.2 120 82.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.2e-50 202.2 119 84.0
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.2e-50 202.2 122 86.1
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.9e-50 201.8 119 84.0
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.9e-50 201.8 117 84.6
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.9e-50 201.8 119 84.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.9e-50 201.8 119 83.2
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.9e-50 201.8 118 85.6
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.8e-50 201.4 120 83.3
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.8e-50 201.4 119 83.2
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.8e-50 201.4 118 85.6
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 5.0e-50 201.1 118 84.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 5.0e-50 201.1 118 84.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 5.0e-50 201.1 124 83.1
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.5e-50 200.7 118 84.7
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.5e-50 200.7 118 84.7
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 6.5e-50 200.7 119 83.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 6.5e-50 200.7 118 84.7
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 8.5e-50 200.3 119 83.2
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 8.5e-50 200.3 121 79.3
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.5e-50 200.3 121 81.0
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.1e-49 199.9 122 81.1
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.5e-49 199.5 122 82.8
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.5e-49 199.5 118 85.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.5e-49 199.5 124 82.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.9e-49 199.1 118 84.7
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.9e-49 199.1 118 83.9
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.9e-49 199.1 118 83.9
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.5e-49 198.7 118 83.1
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.5e-49 198.7 119 82.4
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.2e-49 198.4 118 83.9
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.2e-49 198.0 123 81.3
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 5.5e-49 197.6 119 81.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.5e-49 197.6 124 81.5
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 7.2e-49 197.2 124 82.3
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 7.2e-49 197.2 124 82.3
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 7.2e-49 197.2 124 82.3
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 7.2e-49 197.2 119 81.5
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 9.4e-49 196.8 123 82.1
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 9.4e-49 196.8 123 82.1
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 9.4e-49 196.8 123 82.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.4e-49 196.8 124 81.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 9.4e-49 196.8 124 81.5
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 9.4e-49 196.8 119 79.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 9.4e-49 196.8 120 83.3
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.2e-48 196.4 120 80.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-48 196.4 118 83.1
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.1e-48 195.7 120 79.2
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 2.1e-48 195.7 124 80.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.6e-48 194.9 124 81.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 3.6e-48 194.9 118 81.4
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 4.7e-48 194.5 118 82.2
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.1e-48 194.1 122 81.1
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.1e-48 194.1 122 81.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.1e-48 194.1 113 85.8
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 6.1e-48 194.1 124 76.6
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 8.0e-48 193.7 123 78.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 8.0e-48 193.7 123 78.9
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.0e-48 193.7 120 83.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.0e-48 193.7 122 81.1
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.4e-47 193.0 124 80.6
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-47 193.0 124 79.8
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.8e-47 192.6 118 83.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-47 192.6 125 76.8
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 2.3e-47 192.2 119 78.2
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.0e-47 191.8 124 77.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.0e-47 191.4 116 82.8
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.0e-47 191.4 122 78.7
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 4.0e-47 191.4 118 78.8
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 5.2e-47 191.0 121 79.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 8.8e-47 190.3 122 79.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.6e-46 188.7 121 79.3
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.6e-46 188.7 121 79.3
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.6e-46 188.7 121 79.3
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.6e-46 188.7 121 79.3
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 3.4e-46 188.3 121 79.3
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.4e-46 188.3 120 79.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.4e-46 188.0 124 75.8
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.5e-46 187.2 121 78.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 7.5e-46 187.2 123 78.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-45 185.7 120 77.5
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-45 185.7 120 77.5
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 2.2e-45 185.7 120 77.5
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.2e-45 185.7 120 77.5
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.2e-45 185.7 120 77.5
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-45 185.3 120 77.5
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 3.7e-45 184.9 120 76.7
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.1e-44 181.4 124 75.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.4e-44 181.0 120 75.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.4e-44 181.0 123 76.4
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.2e-43 179.9 120 73.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 4.5e-43 177.9 105 84.8
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 5.0e-42 174.5 124 72.6
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.5e-42 174.1 119 75.6
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 9.5e-41 170.2 120 70.0
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.7e-40 167.9 107 79.4
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.0e-39 166.8 98 84.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-39 166.0 111 77.5
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.8e-39 166.0 119 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 6.8e-39 164.1 118 66.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.8e-39 164.1 118 68.6
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 6.8e-39 164.1 104 79.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.4e-38 161.4 88 89.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.5e-38 160.6 118 66.9
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 9.8e-38 160.2 102 73.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.3e-37 159.8 101 74.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 4.9e-37 157.9 116 66.4
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 4.9e-37 157.9 103 77.7
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 6.3e-37 157.5 118 72.9
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.3e-37 157.5 119 71.4
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 3.5e-35 151.8 91 83.5
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 5.9e-35 151.0 99 75.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.8e-35 150.6 100 79.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-31 140.2 91 75.8
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.3e-31 139.0 80 86.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.3e-29 133.3 81 81.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.3e-29 133.3 76 84.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 7.0e-28 127.5 80 78.8
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.2e-27 126.7 79 77.2
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 8.9e-23 110.5 89 62.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 4.9e-21 104.8 93 59.1
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 7.0e-20 100.9 61 83.6
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 6.0e-19 97.8 68 72.1
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.0e-18 95.5 95 56.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.9e-18 95.1 94 53.2
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-17 93.6 79 63.3
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.1e-16 89.4 57 80.7
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.8e-16 89.0 103 53.4
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.4e-14 82.0 72 65.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.2e-11 73.6 45 80.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.0e-10 70.5 53 69.8
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.6e-10 67.8 38 84.2
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-08 63.5 54 53.7
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 2.1e-08 62.8 41 75.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.3e-07 59.3 44 68.2
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 4.4e-06 55.1 60 48.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 7.6e-06 54.3 49 59.2
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 9.9e-06 53.9 53 54.7


User provided reference genes

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