Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1694.5 844 100.0
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1610.5 845 94.7
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1604.7 845 94.4
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1586.6 909 88.2
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1570.1 845 92.8
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1493.0 838 87.6
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1487.2 845 87.1
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1455.7 838 85.7
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1447.6 845 85.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1431.0 845 83.6
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1426.0 845 83.6
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1425.6 849 84.1
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1425.2 848 84.1
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1423.7 846 84.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 868 81.3
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1420.6 848 83.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1419.8 845 83.6
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 922 79.0
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1407.1 849 81.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1406.7 865 81.6
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1403.3 841 81.1
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1402.5 845 81.3
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1401.7 851 82.5
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1399.0 849 81.5
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1397.9 841 82.2
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1395.6 848 81.0
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1394.4 840 81.9
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1393.6 848 81.4
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1392.5 842 80.9
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1391.3 848 81.4
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1390.2 854 81.0
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1389.4 843 81.4
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1389.4 854 81.0
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1389.0 852 81.5
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1386.7 843 81.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 842 81.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1385.5 860 81.6
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1385.2 854 80.9
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1384.8 843 81.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 848 80.7
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 843 81.1
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1380.5 852 80.8
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1380.5 843 80.9
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1379.0 848 80.5
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1378.6 848 81.5
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 846 82.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1376.7 845 80.6
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1376.7 854 80.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1372.8 848 80.4
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 846 81.1
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1370.1 850 79.9
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 875 79.4
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1361.7 841 79.7
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1361.7 845 80.6
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1360.5 845 79.6
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1354.7 857 77.6
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1353.2 867 78.4
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 838 79.5
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 898 75.5
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 852 79.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 911 75.9
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 841 78.8
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1343.6 857 77.1
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1342.8 853 79.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1338.9 942 71.9
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1337.8 857 76.9
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1335.5 853 79.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1330.5 857 76.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 843 76.9
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1320.4 788 81.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1313.5 857 75.7
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1312.4 916 71.9
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 916 71.4
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 868 75.1
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 868 75.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1288.9 868 75.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1288.9 868 75.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1288.9 868 75.1
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1286.2 868 74.9
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1282.3 858 74.7
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1281.2 765 84.3
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1280.0 868 74.4
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1275.8 858 74.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1274.6 858 74.2
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1270.4 857 74.4
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1264.6 840 74.4
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1250.3 837 72.0
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1249.6 858 71.2
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1213.4 839 73.8
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1192.9 729 81.1
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1167.5 840 70.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1101.3 852 68.4
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1093.2 845 63.1
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1080.5 837 63.1
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 5.8e-312 1073.9 1142 54.4
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.7e-311 1072.4 881 64.4
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 5.2e-295 1017.7 838 59.1
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.0e-291 1005.7 853 64.7
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.3e-281 971.5 625 76.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 4.7e-280 968.0 697 72.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 7.3e-273 944.1 808 63.0
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.1e-272 942.6 471 97.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.6e-272 941.8 729 69.1
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 4.9e-237 825.1 605 69.1
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.3e-226 790.4 406 94.3
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-223 780.8 686 62.4
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.2e-211 740.7 469 81.0
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.3e-199 698.7 433 81.1
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.5e-196 689.9 369 95.9
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.0e-190 670.2 603 59.2
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.2e-177 627.9 848 41.2
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 5.6e-172 609.0 359 81.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-171 607.1 339 89.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 4.1e-159 566.2 857 38.7
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.1e-135 488.4 828 35.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-125 454.5 434 55.8
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 4.2e-119 433.3 1005 30.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-118 431.4 595 46.1
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 5.8e-113 412.9 367 62.1
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.6e-113 412.5 329 57.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.5e-100 371.7 261 67.8
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.1e-98 365.5 332 54.8
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 7.9e-86 322.8 240 69.2
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.9e-80 304.3 165 89.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.5e-79 300.1 218 70.2
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.7e-76 290.0 320 48.8
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 6.5e-72 276.6 159 79.2
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.1e-54 216.9 116 90.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 5.4e-42 177.2 97 85.6
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-39 169.1 101 78.2
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.6e-36 158.3 186 55.4
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-34 152.5 102 74.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 9.2e-34 149.8 98 74.5
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.6e-33 149.1 168 52.4
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-33 148.7 97 73.2
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-31 142.9 98 70.4
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-30 138.3 101 69.3
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-30 138.3 95 70.5
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.6e-28 131.7 67 86.6
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-28 130.6 85 74.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.9e-27 127.5 113 58.4
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 4.9e-27 127.5 96 68.8
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.1e-26 126.3 87 70.1
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 7.1e-26 123.6 102 62.7
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 9.2e-26 123.2 103 64.1
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-25 122.1 125 59.2
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-23 115.9 96 62.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-22 111.3 68 77.9
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.0e-20 105.5 64 75.0
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 4.4e-20 104.4 61 78.7
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 8.4e-19 100.1 115 49.6
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-18 99.4 84 61.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.7e-16 92.4 197 33.5
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 2.8e-14 85.1 54 83.3
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 8.1e-14 83.6 87 52.9
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 8.1e-14 83.6 87 52.9
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.1e-13 83.2 52 73.1
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-13 82.4 52 73.1
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.0e-13 81.3 49 83.7
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 8.4e-11 73.6 79 50.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.4e-10 72.8 37 91.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.0e-08 66.6 85 50.6
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 1.9e-07 62.4 38 78.9
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 8.1e-06 57.0 41 68.3


User provided reference genes

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