Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1345.1 647 100.0
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1338.2 647 99.2
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1285.8 647 95.2
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1285.8 647 95.2
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1284.6 647 95.2
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1279.2 649 95.2
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1278.8 649 95.4
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1224.9 646 91.8
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1216.8 648 88.9
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1213.7 647 88.6
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1211.4 648 89.0
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1209.9 646 87.9
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1207.2 644 88.7
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1205.7 647 88.6
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1202.2 649 88.0
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1202.2 645 87.0
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1201.8 648 87.0
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1201.4 646 87.5
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1199.1 648 87.2
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 645 86.8
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1195.6 648 86.7
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1194.1 645 87.1
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1193.3 648 86.9
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 648 87.5
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 646 87.5
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 645 86.4
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 648 86.4
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 645 87.1
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 648 86.0
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 645 86.8
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1189.5 644 86.5
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1189.5 644 86.5
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 644 86.5
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 646 86.7
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 642 86.3
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 645 86.5
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 644 87.6
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1186.4 647 87.0
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 647 86.6
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 645 86.2
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 646 86.2
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 646 85.4
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 649 85.4
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 648 86.7
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 646 86.8
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 647 85.2
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 648 86.3
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 649 85.4
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 716 79.7
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 648 85.6
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 646 85.8
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 649 85.5
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 648 85.0
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 645 85.6
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 650 84.9
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 639 87.0
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 646 85.9
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 645 85.4
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 647 86.1
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 645 85.4
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 645 86.0
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 646 86.1
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 645 85.4
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 642 84.7
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 649 84.4
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 642 84.6
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 647 84.5
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 647 86.7
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 648 84.4
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 645 85.4
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 648 85.0
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 649 85.7
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 648 85.5
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 643 85.2
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 645 85.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 651 85.4
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 641 83.9
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 646 84.2
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 646 83.9
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 647 84.2
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 647 85.6
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1149.4 642 84.1
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 646 83.9
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 650 84.0
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 648 84.6
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 648 84.6
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 648 84.9
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 648 85.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 648 84.0
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 646 83.4
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 648 84.6
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 648 84.3
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 648 84.4
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 645 83.7
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 645 83.1
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1131.7 594 89.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1125.2 593 89.2
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 645 82.5
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1114.0 641 81.7
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1114.0 651 82.0
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1108.2 620 83.5
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1101.3 584 87.8
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1095.5 642 81.6
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 2.2e-306 1055.0 672 75.9
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.8e-306 1054.3 589 85.6
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 9.4e-305 1049.7 645 78.9
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.5e-302 1042.3 575 85.7
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 5.7e-302 1040.4 582 84.7
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 2.9e-298 1028.1 622 79.9
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.8e-295 1018.8 539 87.0
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.0e-290 1000.7 569 82.2
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.0e-287 993.0 554 83.2
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 8.9e-287 989.9 612 77.5
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 4.6e-251 871.3 474 86.3
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 2.9e-229 798.9 547 70.4
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 5.7e-201 704.9 424 81.4
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 5.7e-201 704.9 393 85.2
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 3.7e-192 675.6 581 58.9
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.6e-147 527.3 267 92.9
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 8.7e-125 451.8 557 47.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.0e-72 278.9 226 60.6
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.2e-69 266.5 125 95.2
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.8e-44 183.3 151 58.9
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.9e-42 178.3 101 79.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 6.6e-40 169.9 93 83.9
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 7.1e-34 149.8 150 55.3
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 3.8e-19 100.9 53 88.7
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.2e-18 97.4 53 86.8
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 3.9e-08 64.3 32 90.6


User provided reference genes

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