Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.7e-137 492.7 247 100.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.9e-112 409.5 260 83.5
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.5e-105 384.0 223 89.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 6.1e-103 377.9 215 87.4
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.5e-101 373.2 216 88.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-101 371.7 216 87.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-100 370.2 216 87.0
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.4e-93 345.5 215 80.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 4.4e-93 345.1 215 79.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.3e-92 343.6 214 79.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.4e-91 340.1 215 80.5
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-90 336.7 215 75.8
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.9e-90 334.7 215 76.3
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.7e-89 333.2 211 78.2
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 3.8e-89 332.0 215 74.9
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.5e-88 330.1 215 74.4
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.5e-88 330.1 216 77.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 4.2e-88 328.6 215 74.9
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 5.5e-88 328.2 216 77.3
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.2e-87 327.0 215 74.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.6e-87 326.6 214 73.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.7e-87 325.9 215 74.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.7e-87 325.1 215 74.0
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 4.7e-87 325.1 215 75.3
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.1e-87 324.7 215 74.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.4e-86 323.6 211 73.5
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.8e-86 323.2 213 75.6
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.3e-86 322.8 215 72.6
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.0e-86 322.4 216 72.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-86 322.0 213 73.7
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.2e-86 321.6 208 75.0
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.2e-86 321.6 208 75.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 6.8e-86 321.2 215 73.5
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 8.8e-86 320.9 215 74.0
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.6e-85 319.3 215 72.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.6e-85 319.3 215 78.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 7.5e-85 317.8 215 71.2
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 9.8e-85 317.4 215 72.1
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 9.8e-85 317.4 208 72.6
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.8e-84 315.8 216 72.2
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 3.7e-84 315.5 255 65.9
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.9e-84 315.1 215 71.6
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.4e-83 313.5 215 67.9
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.4e-83 313.5 252 63.9
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.4e-83 313.5 252 63.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.4e-83 313.5 215 72.1
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.4e-83 313.5 208 72.1
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-83 313.5 248 65.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 2.4e-83 312.8 257 63.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 9.1e-83 310.8 216 71.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 2.0e-82 309.7 216 70.8
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 2.7e-82 309.3 215 67.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 5.9e-82 308.1 210 67.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.3e-81 307.0 208 69.7
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 8.6e-81 304.3 230 67.0
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.5e-80 303.5 210 70.5
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.2e-80 302.0 210 70.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 7.2e-80 301.2 244 63.1
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.0e-78 297.4 210 67.6
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.4e-78 297.0 210 68.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.3e-78 296.2 202 68.8
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 3.0e-78 295.8 210 67.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 5.2e-78 295.0 210 68.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 8.9e-78 294.3 223 68.2
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.2e-77 293.9 212 69.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-77 293.5 207 70.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.4e-77 292.0 215 66.5
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 5.7e-77 291.6 207 69.6
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-77 290.8 209 68.9
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 4.9e-76 288.5 210 65.7
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.3e-76 288.1 207 67.1
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.1e-75 287.3 207 66.7
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.1e-75 287.3 207 66.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.4e-75 287.0 208 65.9
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 4.1e-75 285.4 207 66.2
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.6e-74 283.5 209 66.5
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.0e-74 283.1 209 66.0
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.9e-74 281.6 210 63.3
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.9e-73 279.3 235 62.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.5e-72 276.9 207 64.3
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.9e-72 276.6 219 61.6
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-72 276.6 189 71.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 9.5e-72 274.2 207 63.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 6.1e-71 271.6 207 63.3
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.0e-70 268.9 210 61.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 8.9e-70 267.7 210 61.0
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.2e-69 267.3 209 61.2
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.2e-69 267.3 215 61.4
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.2e-69 267.3 208 60.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.6e-69 266.2 207 60.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.6e-69 266.2 210 60.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.4e-69 265.8 205 62.4
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.4e-69 265.8 205 62.4
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.4e-69 265.8 205 62.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.3e-68 263.8 210 60.0
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.7e-68 262.3 204 62.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 6.4e-68 261.5 203 62.1
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.3e-68 261.2 210 58.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.4e-67 259.6 172 74.4
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 2.4e-67 259.6 209 60.8
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.2e-67 259.2 199 66.8
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 5.4e-67 258.5 215 61.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-67 258.1 207 64.3
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.6e-66 255.4 173 75.1
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 6.0e-66 255.0 210 57.6
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 6.0e-66 255.0 207 59.4
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.9e-65 252.3 194 72.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.6e-65 251.5 213 61.5
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-64 250.0 177 68.9
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 7.3e-64 248.1 170 72.9
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 8.1e-63 244.6 165 72.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.1e-62 242.7 169 72.2
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.6e-61 239.6 204 58.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.2e-60 236.5 167 70.7
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.2e-60 236.5 167 70.7
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.7e-60 235.7 166 68.7
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.4e-59 233.8 219 50.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-59 233.8 205 60.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.4e-59 231.9 169 67.5
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 7.8e-58 228.0 168 69.0
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.3e-57 227.3 210 50.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-56 224.2 164 70.7
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.1e-56 224.2 189 60.3
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-56 223.4 204 57.8
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-55 220.7 211 47.9
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-55 219.5 127 88.2
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 4.7e-55 218.8 133 78.9
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.2e-54 215.3 166 66.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.0e-53 213.4 151 70.9
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 9.2e-51 204.5 134 74.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 9.2e-51 204.5 209 45.9
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 4.6e-50 202.2 205 43.9
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.3e-48 195.7 145 71.0
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-47 194.1 131 72.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-44 183.7 135 66.7
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 6.4e-44 181.8 203 44.8
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 8.4e-44 181.4 123 73.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.4e-43 179.9 200 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 4.2e-43 179.1 191 45.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-43 178.7 133 69.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.9e-41 172.6 135 65.2
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 5.1e-41 172.2 122 70.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.3e-40 169.1 206 40.3
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 3.6e-39 166.0 163 52.1
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-38 163.3 117 68.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 6.9e-38 161.8 211 35.1
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.4e-37 159.5 101 76.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.9e-27 127.1 81 77.8
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.4e-27 126.7 81 72.8
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-25 120.2 91 68.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-23 114.4 77 68.8
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-21 105.5 129 45.7
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-19 100.9 100 56.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.2e-18 97.8 83 60.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.0e-14 81.6 44 79.5
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.6e-13 80.1 66 60.6
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 2.7e-10 70.1 44 70.5
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.0e-09 66.6 102 42.2
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-09 65.9 49 63.3


User provided reference genes

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