Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1795.0 926 100.0
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1686.8 925 95.0
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1652.1 914 93.7
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1650.2 914 93.7
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1635.5 915 92.5
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1543.1 927 88.3
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1428.3 922 80.8
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1420.2 909 81.4
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1398.3 924 78.7
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1397.1 896 80.6
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1396.3 915 78.5
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1390.6 906 80.7
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1387.5 902 78.7
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1383.2 904 79.6
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1377.1 917 77.9
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1375.9 902 78.6
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1374.4 918 78.1
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1374.4 917 77.6
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1374.0 910 78.7
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1372.5 905 78.7
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1371.7 877 81.1
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1369.4 898 78.2
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1368.2 907 78.5
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1366.7 915 76.5
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1366.3 908 77.5
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1360.9 900 77.9
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1360.9 906 78.1
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1360.9 996 73.8
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1353.6 884 79.0
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1353.6 915 77.7
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1352.8 901 77.5
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1352.4 918 77.0
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1352.4 906 76.3
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1350.9 912 78.9
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1350.5 898 78.3
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1348.6 901 78.6
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1346.6 913 78.3
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1346.6 885 78.6
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1346.6 919 77.6
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1345.1 918 77.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1344.7 923 76.6
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1343.9 901 77.0
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1339.3 915 76.9
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1336.6 874 78.8
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1336.2 795 84.3
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1334.3 909 77.0
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1333.9 810 83.3
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1333.5 928 75.5
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1332.8 899 77.0
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1329.3 903 75.7
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1327.4 907 76.2
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1326.6 904 75.8
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1325.1 917 75.8
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1323.9 892 78.3
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1321.2 915 74.2
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1320.8 1017 71.6
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1318.9 899 76.2
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1302.7 903 75.1
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1302.3 908 73.9
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1301.2 917 74.9
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1298.1 910 74.5
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1296.2 919 72.7
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1292.3 908 75.4
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1282.7 911 73.3
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1281.2 910 73.4
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1280.0 914 73.7
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1275.8 944 71.5
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1275.4 909 73.0
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1273.5 1042 67.4
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1272.3 910 72.5
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1271.9 907 72.1
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1268.4 854 77.4
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1265.8 906 72.3
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1260.4 900 72.2
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1258.4 816 78.9
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1248.4 909 71.8
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1248.4 909 71.8
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1245.0 909 71.5
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1243.0 909 71.4
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1231.9 802 78.8
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1211.4 809 75.0
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1209.9 975 68.0
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1185.6 778 79.2
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1182.2 907 66.7
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1130.2 688 83.4
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1119.8 703 81.2
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1113.6 689 81.7
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 1.9e-303 1045.8 813 64.0
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 7.7e-300 1033.9 823 62.6
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 3.0e-288 995.3 832 60.0
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 6.3e-262 907.9 826 55.9
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 3.8e-259 898.7 650 72.2
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 1.3e-254 883.6 600 77.8
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 2.0e-252 876.3 564 77.3
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 6.6e-219 765.0 499 77.0
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 3.4e-215 752.7 514 77.4
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 4.6e-212 742.3 1049 45.3
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 1.3e-209 734.2 498 74.5
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 7.9e-204 714.9 586 61.4
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 7.1e-197 691.8 875 45.3
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 2.7e-196 689.9 511 71.8
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 6.1e-188 662.1 818 44.1
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 1.8e-176 624.0 433 76.0
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 4.1e-176 622.9 646 55.3
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 1.8e-171 607.4 403 77.7
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 9.7e-170 601.7 427 75.2
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 2.1e-164 583.9 339 83.2
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 6.3e-145 519.2 391 68.8
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 1.9e-136 491.1 710 42.4
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 2.4e-112 411.0 339 66.7
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 4.8e-108 396.7 261 78.9
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 2.4e-107 394.4 307 70.7
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 4.6e-95 353.6 262 63.0
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 5.7e-85 320.1 321 51.4
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 2.4e-75 288.1 218 72.0
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 3.1e-75 287.7 282 58.5
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 2.0e-74 285.0 167 83.2
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 5.0e-73 280.4 209 69.9
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 2.1e-71 275.0 187 76.5
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 1.4e-64 252.3 155 80.6
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 8.0e-55 219.9 260 48.5
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 2.3e-54 218.4 109 92.7
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 3.0e-54 218.0 165 71.5
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 3.1e-51 208.0 122 81.1
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 9.1e-51 206.5 120 85.0
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 7.0e-43 180.3 96 88.5
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 1.2e-42 179.5 120 72.5
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.3e-36 159.5 131 63.4
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 2.8e-36 158.3 111 71.2
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 6.8e-30 137.1 111 62.2
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 6.4e-28 130.6 159 49.1
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 5.4e-27 127.5 76 84.2
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.1e-24 119.8 134 51.5
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 1.9e-24 119.0 122 59.8
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.2e-21 109.8 101 59.4
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 1.3e-20 106.3 76 69.7
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 1.9e-19 102.4 145 46.9
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 2.0e-18 99.0 112 53.6
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 2.7e-18 98.6 72 69.4
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.7e-17 95.9 470 25.3
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 2.3e-17 95.5 387 24.3
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 5.0e-17 94.4 87 58.6
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.9e-16 92.4 55 81.8
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 2.5e-16 92.0 43 95.3
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 2.5e-16 92.0 390 24.9
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 1.6e-15 89.4 133 47.4
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.6e-15 89.4 441 23.6
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 1.1e-14 86.7 119 42.9
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.8e-14 85.9 448 23.0
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.2e-13 83.2 351 25.6
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 3.4e-13 81.6 357 24.1
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 4.9e-12 77.8 353 23.2
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 4.9e-12 77.8 499 20.4
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 1.1e-11 76.6 58 67.2
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 1.4e-11 76.3 222 25.2
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.4e-11 75.5 177 31.1
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.2e-11 75.1 595 22.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 9.2e-11 73.6 437 22.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.5e-10 71.6 199 27.1
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 4.6e-10 71.2 198 27.3
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 6.0e-10 70.9 218 25.7
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 3.0e-09 68.6 222 23.9
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.6e-09 67.0 200 27.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 8.6e-09 67.0 181 28.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.1e-08 66.6 179 28.5
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.5e-08 66.2 358 22.1
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.5e-08 66.2 79 49.4
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.5e-08 65.5 284 23.6
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 3.3e-08 65.1 51 66.7
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 4.3e-08 64.7 497 22.1
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 4.3e-08 64.7 475 21.3
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 6.2e-07 60.8 176 25.6
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 2.3e-06 58.9 85 43.5


User provided reference genes

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