Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1615.5 791 100.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1475.7 791 92.5
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1387.9 802 83.5
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1382.9 802 83.2
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1368.6 802 82.5
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1357.4 792 84.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1284.6 810 77.7
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 809 76.1
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 807 76.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1266.1 803 76.7
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 807 76.1
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 810 75.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 805 75.3
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 809 74.9
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 806 75.2
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 806 75.1
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 810 74.8
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 808 74.5
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 802 75.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1249.2 807 74.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 817 73.6
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 806 74.9
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 806 74.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1247.3 811 74.6
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1246.9 807 74.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1246.9 809 74.3
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 807 74.6
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1245.7 809 75.0
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 807 74.5
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 807 74.5
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 808 75.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 809 75.3
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1240.3 811 74.1
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1240.3 809 75.2
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 809 74.9
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 811 73.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 811 73.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 806 73.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1237.2 809 73.9
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1236.9 807 73.5
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1235.7 807 74.3
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1235.3 810 73.8
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 795 75.0
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 806 73.2
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1233.0 808 73.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 807 74.2
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 809 73.1
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1230.7 809 73.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1230.3 811 73.5
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1229.9 808 73.5
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1226.1 803 73.1
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1225.7 808 74.1
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1224.9 805 72.8
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1223.8 783 75.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1223.0 810 73.0
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1219.9 797 74.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 868 69.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 807 72.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 808 73.8
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 805 72.8
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 808 72.6
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 803 71.9
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1210.7 803 75.6
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1210.7 807 72.2
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1203.7 818 71.5
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1201.8 804 72.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 805 71.2
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 807 71.7
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 809 70.6
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 886 66.3
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 805 70.8
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1188.7 801 70.7
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1187.2 808 71.4
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 807 71.1
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 804 70.3
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 804 69.8
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1184.1 804 69.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 803 70.2
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 804 69.9
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1180.6 803 70.4
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 805 69.6
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 804 69.5
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 804 69.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1179.1 804 69.8
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1178.3 805 69.8
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1176.0 805 69.4
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1175.2 805 69.8
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 807 69.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 804 69.7
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 828 69.9
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 804 69.2
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1166.0 806 69.7
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 802 69.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1151.3 810 71.9
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1140.9 804 69.0
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 807 67.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1137.9 860 64.7
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1134.8 807 67.0
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1133.6 859 65.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1132.9 808 69.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1132.9 911 63.7
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1120.9 805 66.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1115.1 806 66.3
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1112.1 778 69.4
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1110.5 819 67.8
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1101.3 962 60.1
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1093.6 807 68.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1092.0 763 68.8
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 3.1e-310 1068.1 962 58.3
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 1.7e-303 1045.8 814 63.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.7e-295 1018.1 819 61.1
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.0e-293 1012.3 790 62.9
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 1.5e-288 996.1 810 64.0
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 9.2e-278 960.3 605 77.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.5e-275 953.0 797 59.1
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.0e-223 778.5 781 55.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 3.7e-186 656.0 850 43.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.7e-178 630.6 803 47.4
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 8.9e-172 608.2 381 76.1
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.6e-160 570.9 826 40.8
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.3e-141 508.1 935 34.1
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.8e-141 506.9 841 37.1
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.5e-118 430.6 411 54.0
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.5e-105 387.5 316 60.1
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.0e-103 382.1 342 59.1
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.7e-93 348.2 223 71.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.0e-91 341.3 198 83.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.8e-79 301.6 221 67.0
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.3e-69 268.9 171 73.1
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.1e-49 202.6 320 40.0
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.4e-45 186.8 141 66.7
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.1e-39 169.5 90 82.2
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.8e-39 168.7 105 75.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.4e-38 164.1 101 75.2
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 5.8e-38 163.7 266 41.4
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.6e-35 155.6 191 48.7
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 2.1e-32 145.2 100 65.0
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.9e-28 132.1 178 44.9
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.2e-28 131.3 94 67.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 2.5e-25 121.7 119 56.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.3e-25 121.3 80 76.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 4.3e-25 120.9 116 50.9
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 8.1e-24 116.7 121 53.7
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.4e-23 115.2 176 41.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.2e-22 112.8 260 31.2
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 7.6e-22 110.2 181 39.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 7.6e-22 110.2 109 54.1
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.1e-20 106.3 69 75.4
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.5e-17 95.1 50 82.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 5.6e-17 94.0 59 76.3
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 6.2e-16 90.5 68 66.2
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.4e-15 88.6 72 58.3
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 5.8e-14 84.0 145 40.0
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.6e-11 75.9 57 70.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.0e-10 71.6 60 51.7
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.5e-09 69.3 75 49.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.9e-09 68.9 129 34.1
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 2.8e-08 65.1 334 24.9
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 2.4e-07 62.0 278 25.2
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 3.1e-07 61.6 322 25.8
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 5.3e-07 60.8 322 25.8
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 2.0e-06 58.9 278 25.2
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 3.4e-06 58.2 331 24.2
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.6e-06 57.0 57 54.4


User provided reference genes

Program Settings