Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001348g0160 Nicotiana tabacum HOM05D000001 ORTHO05D000501 3.0e-104 381.7 174 100.0
Nitab4.5_0004982g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000501 2.3e-80 302.4 204 73.0
Peaxi162Scf01242g00036 Petunia axillaris HOM05D000001 ORTHO05D000501 2.6e-68 262.3 205 62.0
Solyc06g082890.4 Solanum lycopersicum HOM05D000001 ORTHO05D000501 1.3e-67 260.0 175 69.1
Sopen06g034250 Solanum pennellii HOM05D000001 ORTHO05D000501 8.5e-67 257.3 183 66.7
CAN.G874.44 Capsicum annuum HOM05D000001 ORTHO05D000501 1.5e-63 246.5 178 65.7
Solyc09g020110.3 Solanum lycopersicum HOM05D000001 ORTHO05D000501 8.5e-59 230.7 181 59.1
Nitab4.5_0014290g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000501 2.0e-55 219.5 201 53.2
Lj1C106G1 Lonicera japonica HOM05D000001 ORTHO05D000501 6.3e-54 214.5 146 63.7
RcHm_v2.0_Chr6g0281821 Rosa chinensis HOM05D000001 ORTHO05D000501 8.2e-54 214.2 188 54.8
Atru.chr6.3496 Acer truncatum HOM05D000001 ORTHO05D000501 1.1e-53 213.8 179 57.5
CSS0002875 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 1.4e-53 213.4 179 57.5
SGA_v2.0_scaffold77G25319 Striga asiatica HOM05D000001 ORTHO05D000501 6.9e-53 211.1 190 55.8
TWI18G1372 Tripterygium wilfordii HOM05D000001 ORTHO05D000501 9.1e-53 210.7 179 55.9
Sed0009372 Sechium edule HOM05D000001 ORTHO05D000501 1.5e-52 209.9 176 56.8
CSS0003932 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 2.0e-52 209.5 192 55.2
Lj3g0013123 Lotus japonicus HOM05D000001 ORTHO05D000501 2.0e-52 209.5 176 56.2
FvH4_2g17310 Fragaria vesca HOM05D000001 ORTHO05D000501 2.6e-52 209.1 179 55.3
Ciclev10016242m.g Citrus clementina HOM05D000001 ORTHO05D000501 4.5e-52 208.4 148 64.2
Dinv07638 Davidia involucrata HOM05D000001 ORTHO05D000501 4.5e-52 208.4 179 58.1
AUR62028630 Chenopodium quinoa HOM05D000001 ORTHO05D000501 7.7e-52 207.6 147 61.9
EL10Ac5g10576 Beta vulgaris HOM05D000001 ORTHO05D000501 1.7e-51 206.5 148 61.5
PGR083G2135 Punica granatum HOM05D000001 ORTHO05D000501 1.7e-51 206.5 189 52.4
Haze_03549 Corylus avellana HOM05D000001 ORTHO05D000501 2.9e-51 205.7 177 56.5
Glyma.07G059300 Glycine max HOM05D000001 ORTHO05D000501 2.9e-51 205.7 175 56.0
Actinidia23809 Actinidia chinensis HOM05D000001 ORTHO05D000501 3.8e-51 205.3 189 52.9
Glyma.16G028200 Glycine max HOM05D000001 ORTHO05D000501 3.8e-51 205.3 191 51.8
Rhsim01G0246700 Rhododendron simsii HOM05D000001 ORTHO05D000501 3.8e-51 205.3 180 55.0
THA.LOC104815389 Tarenaya hassleriana HOM05D000001 ORTHO05D000501 3.8e-51 205.3 178 54.5
Lalb_Chr10g0100211 Lupinus albus HOM05D000001 ORTHO05D000501 6.5e-51 204.5 179 55.3
CsaV3_7G027100 Cucumis sativus L. HOM05D003048 ORTHO05D003418 1.1e-50 203.8 194 51.5
Eucgr.H00686 Eucalyptus grandis HOM05D000001 ORTHO05D000501 1.1e-50 203.8 179 54.2
MSTRG.12737 Avicennia marina HOM05D000001 ORTHO05D000501 1.9e-50 203.0 198 53.0
Potri.014G174400 Populus trichocarpa HOM05D000001 ORTHO05D000501 1.9e-50 203.0 179 55.3
SGA_v2.0_scaffold158G37513 Striga asiatica HOM05D000001 ORTHO05D000501 2.5e-50 202.6 192 53.1
TAR362G0059 Trochodendron aralioides HOM05D000001 ORTHO05D000501 5.5e-50 201.4 177 55.4
PGSC0003DMG400027682 Solanum tuberosum HOM05D000001 ORTHO05D000501 9.4e-50 200.7 193 55.4
Carub.0004s2186 Capsella rubella HOM05D000001 ORTHO05D000501 1.2e-49 200.3 144 60.4
Cc03_g12450 Coffea canephora HOM05D000001 ORTHO05D000501 1.2e-49 200.3 213 48.4
VMungo0331G1324 Vigna mungo HOM05D000001 ORTHO05D000501 1.6e-49 199.9 190 50.5
MD05G1152000 Malus domestica HOM05D000001 ORTHO05D000501 2.1e-49 199.5 178 54.5
Prupe.8G184700 Prunus persica HOM05D000001 ORTHO05D000501 2.1e-49 199.5 179 54.2
MD10G1146300 Malus domestica HOM05D000001 ORTHO05D000501 2.7e-49 199.1 179 53.6
Manes.12G057200 Manihot esculenta HOM05D000001 ORTHO05D000501 3.6e-49 198.7 178 52.8
BolC4t25887H Brassica oleracea HOM05D000001 ORTHO05D000501 1.0e-48 197.2 172 52.3
Medtr8g028080 Medicago truncatula HOM05D000001 ORTHO05D000501 1.0e-48 197.2 176 52.3
Hund02814 Selenicereus undatus HOM05D000001 ORTHO05D000501 1.0e-48 197.2 146 61.6
MBI07_g34149_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 1.4e-48 196.8 145 58.6
C04p43080 Brassica napus HOM05D000001 ORTHO05D000501 1.8e-48 196.4 174 51.7
Thhalv10027545m.g Eutrema salsugineum HOM05D000001 ORTHO05D000501 1.8e-48 196.4 174 52.3
A04p09160 Brassica napus HOM05D000001 ORTHO05D000501 2.3e-48 196.1 174 51.7
BraA04t16609Z Brassica rapa HOM05D000001 ORTHO05D000501 2.3e-48 196.1 174 51.7
Phvul.010G110200 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 3.0e-48 195.7 191 51.3
Sp7g09390 Schrenkiella parvula HOM05D000001 ORTHO05D000501 3.0e-48 195.7 176 51.7
DCAR_018604 Daucus carota HOM05D002283 ORTHO05D005725 3.9e-48 195.3 177 55.9
arahy.Tifrunner.gnm1.ann1.6AFN3K Arachis hypogaea HOM05D000328 ORTHO05D000501 6.7e-48 194.5 209 45.0
Migut.N00684 Erythranthe guttata HOM05D000001 ORTHO05D000501 1.1e-47 193.7 188 48.9
Duzib133G0742 Durio zibethinus HOM05D000001 ORTHO05D000501 2.0e-47 193.0 176 53.4
AT2G39780 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 2.6e-47 192.6 176 51.1
BcaNung03940 Brassica carinata HOM05D000001 ORTHO05D000501 2.6e-47 192.6 174 50.6
BcaNung03945 Brassica carinata HOM05D000001 ORTHO05D000501 2.6e-47 192.6 174 50.6
Ah.02g110980 Amaranthus hybridus HOM05D000001 ORTHO05D000501 3.3e-47 192.2 179 51.4
ClCG09G007980 Citrullus lanatus HOM05D000001 ORTHO05D000501 7.4e-47 191.0 196 46.9
Psat4g159000 Pisum sativum HOM05D000001 ORTHO05D000501 7.4e-47 191.0 175 53.7
Nitab4.5_0000077g0160 Nicotiana tabacum HOM05D000001 ORTHO05D000501 9.7e-47 190.7 165 58.2
Duzib138G0079 Durio zibethinus HOM05D000001 ORTHO05D000501 1.3e-46 190.3 176 51.7
FAN27G1618 Fragaria x ananassa HOM05D000328 ORTHO05D000501 1.3e-46 190.3 167 55.1
Thecc.01G205800 Theobroma cacao HOM05D000001 ORTHO05D000501 2.2e-46 189.5 179 50.8
CANSAT25G1281 Cannabis sativa HOM05D000001 ORTHO05D000501 3.7e-46 188.7 178 49.4
CANSAT25G0184 Cannabis sativa HOM05D000001 ORTHO05D000501 6.3e-46 188.0 176 50.0
Gohir.A07G195000 Gossypium hirsutum HOM05D000001 ORTHO05D000501 8.2e-46 187.6 193 48.2
Aqoxy3G04090 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 1.1e-45 187.2 176 48.9
Gohir.D07G201400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.1e-45 187.2 178 51.7
Gorai.001G226100 Gossypium raimondii HOM05D000001 ORTHO05D000501 1.1e-45 187.2 178 51.7
TPR.G5088 Trifolium pratense HOM05D000001 ORTHO05D000501 1.4e-45 186.8 178 52.2
MELO3C012716.2 Cucumis melo HOM05D000001 ORTHO05D000501 3.1e-45 185.7 165 55.2
QL09p045139 Quercus lobata HOM05D000001 ORTHO05D000501 5.3e-45 184.9 197 47.7
arahy.Tifrunner.gnm1.ann1.PU0L3U Arachis hypogaea HOM05D000328 ORTHO05D000191 9.1e-45 184.1 184 47.3
Gohir.A11G144400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 9.1e-45 184.1 178 49.4
Lj2C1110T5 Lonicera japonica HOM05D000001 ORTHO05D000501 9.1e-45 184.1 117 68.4
Gorai.007G161700 Gossypium raimondii HOM05D000001 ORTHO05D000501 2.0e-44 183.0 178 48.9
unitig_0.g425 Utricularia gibba HOM05D000001 ORTHO05D000501 2.6e-44 182.6 190 47.9
Lsat_1_v5_gn_9_17140 Lactuca sativa HOM05D000001 ORTHO05D000501 2.9e-43 179.1 174 48.9
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.8e-43 178.7 124 60.5
PSO017G0450 Papaver somniferum HOM05D000001 ORTHO05D000501 8.5e-43 177.6 174 49.4
PSO675G9274 Papaver somniferum HOM05D000001 ORTHO05D000501 8.5e-43 177.6 174 49.4
HanXRQChr08g0231371 Helianthus annuus HOM05D000001 ORTHO05D000501 1.1e-42 177.2 178 47.2
Aa31sc147G20 Aethionema arabicum HOM05D000001 ORTHO05D000501 2.5e-42 176.0 192 44.8
Ca_23574_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000501 9.4e-42 174.1 181 48.6
Ca_23583_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000501 9.4e-42 174.1 181 48.6
Oeu003681.1 Olea europaea HOM05D000001 ORTHO05D000501 1.6e-41 173.3 265 38.1
Hund09492 Selenicereus undatus HOM05D000001 ORTHO05D000501 5.2e-40 168.3 224 40.2
Migut.D00765 Erythranthe guttata HOM05D000001 ORTHO05D000501 1.2e-39 167.2 176 47.7
Aqoxy3G04089 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 1.5e-39 166.8 177 46.9
SalBow2G1658 Salvia bowleyana HOM05D000001 ORTHO05D000501 3.3e-39 165.6 214 40.7
CDE09G0541 Ceratophyllum demersum HOM05D000001 ORTHO05D000501 1.7e-38 163.3 176 45.5
BcaC02g09465 Brassica carinata HOM05D000001 ORTHO05D000501 4.1e-37 158.7 148 50.7
Cpa.g.sc8.28 Carica papaya HOM05D000001 ORTHO05D000501 3.5e-36 155.6 172 47.1
FAN24G0970 Fragaria x ananassa HOM05D000328 ORTHO05D000191 7.7e-36 154.5 126 57.9
CANSAT25G2603 Cannabis sativa HOM05D000001 ORTHO05D000501 1.3e-35 153.7 147 48.3
Os01g0897200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 1.3e-30 137.1 195 34.4
HPP92_003442 Vanilla planifolia HOM05D000001 ORTHO05D000501 2.2e-30 136.3 182 40.7
Zm00001eb144680 Zea mays HOM05D000001 ORTHO05D000501 2.4e-29 132.9 176 34.7
CsaV3_4G009480 Cucumis sativus L. HOM05D000001 ORTHO05D000501 3.1e-29 132.5 178 36.0
ClCG10G009310 Citrullus lanatus HOM05D000001 ORTHO05D000501 7.0e-29 131.3 171 37.4
HanXRQChr08g0231581 Helianthus annuus HOM05D000001 ORTHO05D000501 1.2e-28 130.6 190 34.7
HanXRQChr08g0231391 Helianthus annuus HOM05D000001 ORTHO05D000501 1.6e-28 130.2 190 34.7
Peaxi162Scf00315g00073 Petunia axillaris HOM05D000001 ORTHO05D000501 2.7e-28 129.4 115 53.0
Sed0028152 Sechium edule HOM05D000001 ORTHO05D000501 5.9e-28 128.3 178 34.8
AagrBONN_evm.TU.Sc2ySwM_344.5094 Anthoceros agrestis HOM05D000001 ORTHO05D000501 3.8e-27 125.6 152 39.5
Zm00001eb144670 Zea mays HOM05D000001 ORTHO05D000501 1.1e-26 124.0 178 34.3
Os01g0897300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 1.5e-26 123.6 178 34.3
GSVIVG01004446001 Vitis vinifera HOM05D000001 ORTHO05D000501 1.5e-26 123.6 105 59.0
Dinv28782 Davidia involucrata HOM05D002283 ORTHO05D005725 2.5e-26 122.9 85 68.2
Nn1g09526 Nelumbo nucifera HOM05D000001 ORTHO05D000501 3.3e-26 122.5 176 37.5
CARHR134650 Cardamine hirsuta HOM05D000001 ORTHO05D000501 4.2e-26 122.1 82 68.3
HanXRQChr08g0231491 Helianthus annuus HOM05D000001 ORTHO05D000501 7.2e-26 121.3 189 33.3
ECA247G1044 Erigeron canadensis HOM05D000001 ORTHO05D000501 2.1e-25 119.8 132 45.5
FAN15G3637 Fragaria x ananassa HOM05D000328 ORTHO05D000191 2.1e-25 119.8 108 54.6
HanXRQChr08g0231661 Helianthus annuus HOM05D000001 ORTHO05D000501 1.4e-24 117.1 148 37.2
Sc17g0001470 Simmondsia chinensis HOM05D000001 ORTHO05D000501 2.3e-24 116.3 85 63.5
Gohir.D11G150800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 5.2e-24 115.2 90 58.9
ClCG10G009300 Citrullus lanatus HOM05D000001 ORTHO05D000501 6.8e-24 114.8 175 33.1
COL.COLO4_29921 Corchorus olitorius HOM05D000001 ORTHO05D000501 2.6e-23 112.8 85 57.6
Actinidia23127 Actinidia chinensis HOM05D000001 ORTHO05D000501 1.7e-22 110.2 61 72.1
PGSC0003DMG400029006 Solanum tuberosum HOM05D000001 ORTHO05D011642 2.8e-22 109.4 80 57.5
Sopen09g012980 Solanum pennellii HOM05D000001 ORTHO05D000501 1.4e-21 107.1 63 66.7
ECA247G0991 Erigeron canadensis HOM05D000001 ORTHO05D000501 4.1e-21 105.5 80 60.0
Dinv28783 Davidia involucrata HOM05D000001 ORTHO05D000501 5.9e-20 101.7 61 68.9
MBI07_g34148_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 7.8e-20 101.3 83 54.2
MBI07_g08808_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000501 8.6e-19 97.8 83 53.0
Mapoly0043s0116 Marchantia polymorpha HOM05D000001 ORTHO05D000501 8.6e-19 97.8 179 28.5
Sabra14G0133700 Salix brachista HOM05D000001 ORTHO05D000501 5.6e-18 95.1 63 61.9
vmacro14677 Vaccinium macrocarpon HOM05D000001 ORTHO05D000501 2.8e-17 92.8 53 77.4
CARHR134640 Cardamine hirsuta HOM05D000001 ORTHO05D000501 4.7e-17 92.0 61 59.0
CiPaw.16G072600 Carya illinoinensis HOM05D000001 ORTHO05D000501 8.0e-17 91.3 61 60.7
MELO3C024816.2 Cucumis melo HOM05D000001 ORTHO05D000501 2.9e-14 82.8 61 47.5
ATR0564G168 Amborella trichopoda HOM05D000001 ORTHO05D000501 1.3e-11 73.9 176 29.0
Psat2g119480 Pisum sativum HOM05D000001 ORTHO05D000501 1.9e-10 70.1 172 27.9
TPR.G39204 Trifolium pratense HOM05D000001 ORTHO05D000501 2.5e-10 69.7 173 26.6
Actinidia23128 Actinidia chinensis HOM05D000001 ORTHO05D000501 3.3e-10 69.3 51 62.7
Cre06.g306550 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D000501 3.3e-10 69.3 154 27.9
VMungo1215G3182 Vigna mungo HOM05D000001 ORTHO05D000501 3.3e-10 69.3 173 26.6
CDE07G1111 Ceratophyllum demersum HOM05D000001 ORTHO05D000501 5.6e-10 68.6 181 27.6
FvH4_4g31290 Fragaria vesca HOM05D000001 ORTHO05D000501 5.6e-10 68.6 172 29.1
FAN12G3485 Fragaria x ananassa HOM05D000001 ORTHO05D000501 5.6e-10 68.6 172 29.1
FAN17G2920 Fragaria x ananassa HOM05D000001 ORTHO05D000501 5.6e-10 68.6 172 28.5
FAN22G0963 Fragaria x ananassa HOM05D000001 ORTHO05D000501 7.3e-10 68.2 172 28.5
MD13G1071500 Malus domestica HOM05D000001 ORTHO05D000501 7.3e-10 68.2 173 29.5
Eucgr.G02497 Eucalyptus grandis HOM05D000001 ORTHO05D000501 9.5e-10 67.8 172 27.9
Medtr5g041010 Medicago truncatula HOM05D000001 ORTHO05D000501 9.5e-10 67.8 173 26.6
Phvul.002G084500 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 1.6e-09 67.0 173 25.4
Sed0009853 Sechium edule HOM05D000001 ORTHO05D000501 2.8e-09 66.2 173 26.0
ClCG05G024250 Citrullus lanatus HOM05D000001 ORTHO05D000501 3.6e-09 65.9 170 27.1
MELO3C012100.2 Cucumis melo HOM05D000001 ORTHO05D000501 6.2e-09 65.1 173 24.9
Glyma.01G048400 Glycine max HOM05D000001 ORTHO05D000501 6.2e-09 65.1 173 25.4
Sed0003784 Sechium edule HOM05D000001 ORTHO05D000501 6.2e-09 65.1 174 27.6
arahy.Tifrunner.gnm1.ann1.W4CKNF Arachis hypogaea HOM05D000001 ORTHO05D000501 8.0e-09 64.7 173 24.9
RcHm_v2.0_Chr4g0439731 Rosa chinensis HOM05D000001 ORTHO05D000501 8.0e-09 64.7 172 27.3
arahy.Tifrunner.gnm1.ann1.LR2QH7 Arachis hypogaea HOM05D000001 ORTHO05D000501 1.1e-08 64.3 173 24.9
AUR62032783 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.1e-08 64.3 172 26.2
TWI31G1458 Tripterygium wilfordii HOM05D000001 ORTHO05D000501 1.1e-08 64.3 173 25.4
GSVIVG01001918001 Vitis vinifera HOM05D000001 ORTHO05D000501 1.4e-08 63.9 37 70.3
AUR62005793 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.3e-08 63.2 172 26.2
Gohir.D12G167800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 2.3e-08 63.2 172 26.7
Thecc.02G345100 Theobroma cacao HOM05D000001 ORTHO05D000501 2.3e-08 63.2 174 28.2
Gohir.A12G164700 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.1e-08 62.8 172 26.7
Glyma.02G108000 Glycine max HOM05D000001 ORTHO05D000501 5.2e-08 62.0 173 24.3
CARHR014640 Cardamine hirsuta HOM05D000001 ORTHO05D000501 6.8e-08 61.6 178 25.8
QL03p068759 Quercus lobata HOM05D000001 ORTHO05D000501 6.8e-08 61.6 173 26.6
Prupe.1G275400 Prunus persica HOM05D000001 ORTHO05D000501 1.5e-07 60.5 173 27.2
Cfa008975 Carpinus fangiana HOM05D000001 ORTHO05D000501 2.6e-07 59.7 164 26.2
COL.COLO4_22959 Corchorus olitorius HOM05D000001 ORTHO05D000501 2.6e-07 59.7 172 26.2
Potri.010G168700 Populus trichocarpa HOM05D000001 ORTHO05D000501 2.6e-07 59.7 173 24.3
Lj2g0000960 Lotus japonicus HOM05D000001 ORTHO05D000501 4.4e-07 58.9 59 44.1
Pp3c2_17290 Physcomitrium patens HOM05D000001 ORTHO05D000501 4.4e-07 58.9 182 24.7
Rhsim01G0145400 Rhododendron simsii HOM05D000001 ORTHO05D000501 5.8e-07 58.5 174 25.3
CsaV3_5G032730 Cucumis sativus L. HOM05D000001 ORTHO05D000501 7.5e-07 58.2 96 33.3
Ca_27055_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000501 1.7e-06 57.0 59 42.4
Duzib248G1039 Durio zibethinus HOM05D000001 ORTHO05D000501 3.7e-06 55.8 130 32.3
Lalb_Chr17g0340731 Lupinus albus HOM05D000001 ORTHO05D000501 3.7e-06 55.8 59 40.7
AT1G14220 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 8.3e-06 54.7 59 40.7
MELO3C012099.2 Cucumis melo HOM05D000001 ORTHO05D000501 8.3e-06 54.7 59 40.7
DCAR_031018 Daucus carota HOM05D000001 ORTHO05D004422 8.3e-06 54.7 174 25.3


User provided reference genes

Program Settings