Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.6e-157 559.3 276 100.0
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 3.6e-144 515.0 276 93.1
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 4.8e-141 504.6 276 90.9
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 1.1e-140 503.4 276 90.9
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 2.4e-140 502.3 276 90.6
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 2.0e-134 482.6 276 87.0
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 1.8e-132 476.1 276 85.9
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 4.1e-84 315.5 271 62.4
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 1.0e-82 310.8 264 61.7
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 8.7e-82 307.8 277 57.4
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 1.9e-81 306.6 274 58.8
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 3.3e-81 305.8 269 58.0
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 7.3e-81 304.7 270 57.8
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 6.2e-80 301.6 265 58.1
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 1.4e-79 300.4 266 58.3
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 2.4e-79 299.7 269 58.4
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 3.1e-79 299.3 267 58.1
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 1.2e-78 297.4 290 56.6
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.5e-78 297.0 268 58.6
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 7.6e-78 294.7 265 56.6
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 6.4e-77 291.6 272 57.4
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.4e-76 290.4 269 56.9
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 1.4e-76 290.4 268 56.0
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 2.4e-76 289.7 265 57.0
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 3.2e-76 289.3 265 57.0
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 5.4e-76 288.5 294 55.4
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 9.3e-76 287.7 272 57.0
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 9.3e-76 287.7 294 53.7
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 2.7e-75 286.2 268 56.3
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 2.7e-75 286.2 280 54.3
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 3.5e-75 285.8 264 56.4
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 4.6e-75 285.4 264 56.1
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 6.0e-75 285.0 269 56.9
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 6.0e-75 285.0 275 57.1
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 7.8e-75 284.6 268 56.3
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 1.3e-74 283.9 269 56.5
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 1.7e-74 283.5 271 55.4
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 2.3e-74 283.1 265 54.3
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 3.9e-74 282.3 268 54.1
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 3.9e-74 282.3 272 55.9
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 8.7e-74 281.2 269 56.1
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.1e-73 280.8 268 53.7
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 2.5e-73 279.6 269 55.8
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 1.3e-72 277.3 272 54.0
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 2.8e-72 276.2 273 54.2
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 4.8e-72 275.4 272 55.9
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 6.2e-72 275.0 272 55.5
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.1e-71 274.2 264 55.7
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 1.4e-71 273.9 274 55.5
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 1.4e-71 273.9 268 55.6
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 3.1e-71 272.7 267 54.7
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 3.1e-71 272.7 273 54.6
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 9.0e-71 271.2 279 49.8
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 1.2e-70 270.8 264 55.7
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 4.5e-70 268.9 264 54.2
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 7.6e-70 268.1 268 53.0
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 1.7e-69 266.9 271 55.7
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 6.4e-69 265.0 269 52.8
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 2.4e-68 263.1 310 48.4
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 7.1e-68 261.5 278 51.4
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 7.1e-68 261.5 265 53.2
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 3.5e-67 259.2 265 52.5
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 3.5e-67 259.2 273 50.9
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 4.6e-67 258.8 296 48.6
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 1.0e-66 257.7 300 51.0
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.9e-66 255.8 277 52.3
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 3.9e-66 255.8 335 47.8
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.5e-65 253.8 262 51.5
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 7.4e-65 251.5 268 53.0
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 7.4e-65 251.5 272 52.2
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 2.1e-64 250.0 258 51.9
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 6.2e-64 248.4 258 51.9
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 6.2e-64 248.4 258 51.9
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 4.0e-63 245.7 247 53.8
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 1.2e-62 244.2 327 44.6
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 2.6e-62 243.0 328 45.4
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 1.7e-61 240.4 326 42.6
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 1.1e-60 237.7 251 51.0
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 4.2e-60 235.7 272 50.0
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 6.0e-59 231.9 277 49.1
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 3.0e-58 229.6 240 50.4
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.2e-56 221.9 264 45.1
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 5.3e-55 218.8 270 47.8
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.5e-54 217.2 269 46.8
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 3.5e-51 206.1 260 46.9
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 3.4e-46 189.5 266 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 2.2e-45 186.8 305 38.0
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 9.4e-44 181.4 302 40.4
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 6.7e-42 175.3 277 36.1
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 4.3e-41 172.6 139 59.7
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 9.7e-41 171.4 261 39.1
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.3e-40 171.0 184 53.3
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 2.8e-40 169.9 202 47.5
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 6.7e-34 148.7 267 37.8
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.8e-32 143.3 129 57.4
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 3.7e-32 142.9 129 57.4
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 3.1e-31 139.8 150 50.0
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.5e-29 132.1 115 55.7
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.9e-28 130.6 114 57.9
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 6.1e-27 125.6 109 59.6
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 3.7e-24 116.3 402 27.6
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.6e-22 110.2 66 77.3
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 2.6e-22 110.2 83 63.9
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 3.8e-21 106.3 98 54.1
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.2e-16 90.5 66 66.7
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 4.0e-10 69.7 69 55.1
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 8.8e-10 68.6 86 50.0
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.2e-08 63.9 128 32.0
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 3.7e-08 63.2 114 36.0
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.8e-08 62.8 114 35.1
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 8.3e-08 62.0 127 35.4
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.8e-07 60.8 111 34.2
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 1.8e-07 60.8 122 32.0
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 3.1e-07 60.1 123 35.0
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 4.1e-07 59.7 154 29.9
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 5.4e-07 59.3 201 25.9
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 7.0e-07 58.9 123 35.0
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 9.1e-07 58.5 43 58.1
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 9.1e-07 58.5 98 34.7
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 9.1e-07 58.5 123 32.5
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 1.2e-06 58.2 119 32.8
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.2e-06 58.2 120 34.2
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 1.2e-06 58.2 138 31.2
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 1.6e-06 57.8 129 31.0
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 1.6e-06 57.8 138 29.0
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.0e-06 57.4 133 29.3
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.0e-06 57.4 133 29.3
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 2.0e-06 57.4 120 33.3
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 2.0e-06 57.4 153 24.8
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 2.7e-06 57.0 144 29.2
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.7e-06 57.0 117 33.3
MD02G1270000 Malus domestica HOM05D005384 ORTHO05D006477 2.7e-06 57.0 127 32.3
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 2.7e-06 57.0 124 32.3
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 2.7e-06 57.0 120 33.3
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 3.5e-06 56.6 104 32.7
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 3.5e-06 56.6 138 27.5
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 3.5e-06 56.6 116 32.8
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 3.5e-06 56.6 117 32.5
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 3.5e-06 56.6 116 33.6
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 3.5e-06 56.6 114 35.1
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 4.5e-06 56.2 135 31.1
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 5.9e-06 55.8 132 28.0
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 7.7e-06 55.5 115 32.2
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 7.7e-06 55.5 115 32.2
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 7.7e-06 55.5 126 32.5


User provided reference genes

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