Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001152g0730 Nicotiana tabacum HOM05D001090 ORTHO05D006167 3.0e-43 177.9 81 100.0
Nitab4.5_0001763g0080 Nicotiana tabacum HOM05D001090 ORTHO05D006167 3.4e-18 94.7 83 61.4
Nitab4.5_0000886g0200 Nicotiana tabacum HOM05D001090 ORTHO05D006167 8.3e-17 90.1 43 93.0
Nitab4.5_0000172g1520 Nicotiana tabacum HOM05D001090 ORTHO05D006167 7.8e-15 83.6 43 86.0
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 7.8e-15 83.6 43 86.0
Nitab4.5_0001761g0290 Nicotiana tabacum HOM05D001090 ORTHO05D006167 5.0e-14 80.9 41 87.8
Nitab4.5_0001796g0360 Nicotiana tabacum HOM05D001090 ORTHO05D006167 7.3e-13 77.0 39 89.7
Nitab4.5_0010487g0020 Nicotiana tabacum HOM05D001090 ORTHO05D006167 2.8e-12 75.1 39 84.6
Nitab4.5_0000215g0050 Nicotiana tabacum HOM05D001090 ORTHO05D285144 5.2e-11 70.9 41 73.2
Potri.002G187100 Populus trichocarpa HOM05D001090 ORTHO05D006167 2.2e-09 65.5 37 78.4
TWI23G1021 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 4.9e-09 64.3 37 78.4
Potri.014G112600 Populus trichocarpa HOM05D001090 ORTHO05D006167 1.1e-08 63.2 37 75.7
Manes.01G235000 Manihot esculenta HOM05D001090 ORTHO05D006167 1.9e-08 62.4 37 73.0
Manes.05G009100 Manihot esculenta HOM05D001090 ORTHO05D006167 1.9e-08 62.4 37 73.0
Sabra02G0129700 Salix brachista HOM05D001090 ORTHO05D006167 1.9e-08 62.4 37 75.7
Sabra14G0082800 Salix brachista HOM05D001090 ORTHO05D006167 3.2e-08 61.6 37 73.0
TWI59G0772 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 5.4e-08 60.8 37 73.0
Eucgr.K00564 Eucalyptus grandis HOM05D001090 ORTHO05D006167 7.1e-08 60.5 36 77.8
Cpa.g.sc57.13 Carica papaya HOM05D001090 ORTHO05D006167 9.2e-08 60.1 37 67.6
ClCG11G013170 Citrullus lanatus HOM05D001090 ORTHO05D006167 1.2e-07 59.7 36 77.8
MELO3C011813.2 Cucumis melo HOM05D001090 ORTHO05D006167 1.2e-07 59.7 36 77.8
Zm00001eb340490 Zea mays HOM05D001090 ORTHO05D006167 1.2e-07 59.7 36 72.2
Atru.chr5.863 Acer truncatum HOM05D001090 ORTHO05D006167 1.6e-07 59.3 36 69.4
Os01g0321700 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D006167 1.6e-07 59.3 36 72.2
Glyma.03G224400 Glycine max HOM05D001090 ORTHO05D006167 2.1e-07 58.9 36 75.0
Glyma.19G221300 Glycine max HOM05D001090 ORTHO05D006167 2.1e-07 58.9 36 75.0
Lalb_Chr04g0260211 Lupinus albus HOM05D001090 ORTHO05D006167 2.1e-07 58.9 36 75.0
Lalb_Chr18g0046391 Lupinus albus HOM05D001090 ORTHO05D006167 2.1e-07 58.9 36 75.0
CsaV3_5G029690 Cucumis sativus L. HOM05D001090 ORTHO05D002687 2.7e-07 58.5 36 75.0
RcHm_v2.0_Chr3g0485911 Rosa chinensis HOM05D001090 ORTHO05D006167 3.5e-07 58.2 36 75.0
Lj1g0021730 Lotus japonicus HOM05D001090 ORTHO05D006167 4.6e-07 57.8 36 72.2
TPR.G2501 Trifolium pratense HOM05D001090 ORTHO05D006167 4.6e-07 57.8 36 72.2
EL10Ac7g17290 Beta vulgaris HOM05D001090 ORTHO05D006167 6.0e-07 57.4 36 69.4
COL.COLO4_23131 Corchorus olitorius HOM05D001090 ORTHO05D006167 6.0e-07 57.4 37 67.6
Gohir.D12G123700 Gossypium hirsutum HOM05D001090 ORTHO05D006167 6.0e-07 57.4 44 59.1
Gorai.008G134800 Gossypium raimondii HOM05D001090 ORTHO05D006167 6.0e-07 57.4 44 59.1
Phvul.001G218200 Phaseolus vulgaris HOM05D001090 ORTHO05D006167 6.0e-07 57.4 36 72.2
Hund11624 Selenicereus undatus HOM05D001090 ORTHO05D006167 6.0e-07 57.4 36 72.2
Thecc.01G325100 Theobroma cacao HOM05D001090 ORTHO05D006167 6.0e-07 57.4 37 67.6
VMungo1383G1946 Vigna mungo HOM05D001090 ORTHO05D006167 6.0e-07 57.4 36 72.2
CSS0011193 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 72.2
CANSAT25G3150 Cannabis sativa HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 72.2
Dinv33168 Davidia involucrata HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 72.2
Medtr7g110640 Medicago truncatula HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 69.4
Nn3g21945 Nelumbo nucifera HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 69.4
Rhsim01G0000300 Rhododendron simsii HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 72.2
Sed0008475 Sechium edule HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 72.2
vmacro02360 Vaccinium macrocarpon HOM05D001090 ORTHO05D006167 7.8e-07 57.0 36 72.2
Duzib133G1021 Durio zibethinus HOM05D001090 ORTHO05D006167 1.0e-06 56.6 36 69.4
Duzib138G0040 Durio zibethinus HOM05D001090 ORTHO05D006167 1.0e-06 56.6 36 69.4
PGR142G4102 Punica granatum HOM05D001090 ORTHO05D006167 1.0e-06 56.6 36 69.4
CAN.G100.57 Capsicum annuum HOM05D001090 ORTHO05D006167 1.3e-06 56.2 36 72.2
Migut.N00921 Erythranthe guttata HOM05D001090 ORTHO05D006167 1.3e-06 56.2 36 69.4
Gohir.A11G104600 Gossypium hirsutum HOM05D001090 ORTHO05D006167 1.3e-06 56.2 35 71.4
Oeu038075.1 Olea europaea HOM05D001090 ORTHO05D006167 1.3e-06 56.2 36 69.4
Solyc01g080850.4 Solanum lycopersicum HOM05D001090 ORTHO05D006167 1.3e-06 56.2 36 72.2
Sopen01g030630 Solanum pennellii HOM05D001090 ORTHO05D006167 1.3e-06 56.2 36 72.2
FvH4_1g26250 Fragaria vesca HOM05D001090 ORTHO05D006167 1.7e-06 55.8 36 72.2
FAN23G2339 Fragaria x ananassa HOM05D001090 ORTHO05D006167 1.7e-06 55.8 36 72.2
FAN26G0681 Fragaria x ananassa HOM05D001090 ORTHO05D006167 1.7e-06 55.8 36 72.2
FAN28G2823 Fragaria x ananassa HOM05D001090 ORTHO05D006167 1.7e-06 55.8 36 72.2
Psat3g016720 Pisum sativum HOM05D001090 ORTHO05D006167 1.7e-06 55.8 36 72.2
GSVIVG01028251001 Vitis vinifera HOM05D001090 ORTHO05D006167 1.7e-06 55.8 36 69.4
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 2.3e-06 55.5 36 72.2
arahy.Tifrunner.gnm1.ann1.XGP1KG Arachis hypogaea HOM05D001090 ORTHO05D006167 2.3e-06 55.5 36 72.2
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 3.0e-06 55.1 36 66.7
Peaxi162Scf00309g00913 Petunia axillaris HOM05D001090 ORTHO05D006167 3.0e-06 55.1 36 69.4
Ah.15g091800 Amaranthus hybridus HOM05D001090 ORTHO05D006167 3.9e-06 54.7 36 63.9
CiPaw.08G082800 Carya illinoinensis HOM05D001090 ORTHO05D006167 3.9e-06 54.7 36 69.4
Ciclev10018812m.g Citrus clementina HOM05D001090 ORTHO05D006167 3.9e-06 54.7 36 63.9
Nitab4.5_0000222g0360 Nicotiana tabacum HOM05D001090 ORTHO05D006167 3.9e-06 54.7 36 69.4
Nitab4.5_0003092g0010 Nicotiana tabacum HOM05D001090 ORTHO05D006167 3.9e-06 54.7 36 69.4
Cfa004911 Carpinus fangiana HOM05D001090 ORTHO05D006167 5.1e-06 54.3 36 69.4
Haze_05146 Corylus avellana HOM05D001090 ORTHO05D006167 5.1e-06 54.3 36 69.4
Lalb_Chr02g0147141 Lupinus albus HOM05D001090 ORTHO05D006167 5.1e-06 54.3 36 69.4
MD17G1284900 Malus domestica HOM05D001090 ORTHO05D006167 5.1e-06 54.3 36 63.9
Nn4g25350 Nelumbo nucifera HOM05D001090 ORTHO05D006167 5.1e-06 54.3 36 66.7
QL12p034939 Quercus lobata HOM05D001090 ORTHO05D006167 5.1e-06 54.3 36 69.4
ATR0598G284 Amborella trichopoda HOM05D001090 ORTHO05D006167 6.6e-06 53.9 36 63.9
Dinv12082 Davidia involucrata HOM05D001090 ORTHO05D006167 6.6e-06 53.9 36 66.7
Prupe.3G002800 Prunus persica HOM05D001090 ORTHO05D006167 6.6e-06 53.9 36 66.7
Actinidia25871 Actinidia chinensis HOM05D001090 ORTHO05D006167 8.6e-06 53.5 36 69.4
MD09G1290300 Malus domestica HOM05D001090 ORTHO05D006167 8.6e-06 53.5 36 66.7
TAR365G0940 Trochodendron aralioides HOM05D001090 ORTHO05D006167 8.6e-06 53.5 36 66.7


User provided reference genes

Program Settings