Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001027g0090 Nicotiana tabacum HOM05D006723 ORTHO05D008194 7.9e-54 213.4 98 100.0
Nitab4.5_0003477g0050 Nicotiana tabacum HOM05D006723 ORTHO05D008194 4.8e-19 97.8 77 67.5
Nitab4.5_0000603g0090 Nicotiana tabacum HOM05D006723 ORTHO05D008194 6.3e-19 97.4 77 67.5
Peaxi162Scf00285g00213 Petunia axillaris HOM05D006723 ORTHO05D008194 2.0e-17 92.4 77 66.2
PGSC0003DMG400012934 Solanum tuberosum HOM05D006723 ORTHO05D008194 1.0e-16 90.1 77 63.6
Manes.08G047500 Manihot esculenta HOM05D006723 ORTHO05D008194 1.8e-13 79.3 75 57.3
Gohir.D09G122000 Gossypium hirsutum HOM05D006723 ORTHO05D008194 3.0e-13 78.6 75 58.7
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 3.0e-13 78.6 75 57.3
vmacro08024 Vaccinium macrocarpon HOM05D006723 ORTHO05D008194 3.0e-13 78.6 75 56.0
Cpa.g.c34124.1 Carica papaya HOM05D006723 ORTHO05D008194 4.0e-13 78.2 78 53.8
Gohir.A09G125000 Gossypium hirsutum HOM05D006723 ORTHO05D008194 5.2e-13 77.8 75 58.7
Gorai.006G139700 Gossypium raimondii HOM05D006723 ORTHO05D008194 5.2e-13 77.8 75 58.7
TAR633G1569 Trochodendron aralioides HOM05D006723 ORTHO05D008194 5.2e-13 77.8 76 56.6
Actinidia09370 Actinidia chinensis HOM05D006723 ORTHO05D008194 1.2e-12 76.6 75 57.3
SalBow6G0316 Salvia bowleyana HOM05D006723 ORTHO05D008194 4.4e-12 74.7 97 45.4
ATR0605G349 Amborella trichopoda HOM05D006723 ORTHO05D008194 5.7e-12 74.3 75 53.3
Eucgr.K01816 Eucalyptus grandis HOM05D006723 ORTHO05D008194 5.7e-12 74.3 76 51.3
Thecc.05G165200 Theobroma cacao HOM05D006723 ORTHO05D008194 5.7e-12 74.3 41 80.5
CSS0020210 Camellia sinensis var. sinensis HOM05D006723 ORTHO05D008194 7.5e-12 73.9 77 51.9
CSS0038437 Camellia sinensis var. sinensis HOM05D006723 ORTHO05D008194 7.5e-12 73.9 77 51.9
Nn7g36117 Nelumbo nucifera HOM05D006723 ORTHO05D008194 7.5e-12 73.9 75 54.7
COL.COLO4_28733 Corchorus olitorius HOM05D006723 ORTHO05D008194 1.7e-11 72.8 75 54.7
DCAR_013569 Daucus carota HOM05D006723 ORTHO05D008194 1.7e-11 72.8 77 53.2
Solyc03g051770.2 Solanum lycopersicum HOM05D006723 ORTHO05D008194 1.7e-11 72.8 77 54.5
Sopen03g011140 Solanum pennellii HOM05D006723 ORTHO05D008194 1.7e-11 72.8 77 54.5
AUR62025979 Chenopodium quinoa HOM05D006723 ORTHO05D008194 2.8e-11 72.0 75 50.7
CiPaw.10G029600 Carya illinoinensis HOM05D006723 ORTHO05D008194 3.7e-11 71.6 75 50.7
Ciclev10004869m.g Citrus clementina HOM05D006723 ORTHO05D008194 6.3e-11 70.9 75 53.3
Hund24753 Selenicereus undatus HOM05D006723 ORTHO05D008194 8.3e-11 70.5 76 48.7
MD03G1162500 Malus domestica HOM05D006723 ORTHO05D008194 1.1e-10 70.1 75 52.0
MD12G1064100 Malus domestica HOM05D006723 ORTHO05D008194 1.1e-10 70.1 75 52.0
Rhsim03G0010800 Rhododendron simsii HOM05D006723 ORTHO05D008194 1.4e-10 69.7 75 49.3
AUR62024376 Chenopodium quinoa HOM05D006723 ORTHO05D008194 2.4e-10 68.9 75 48.0
QL01p033062 Quercus lobata HOM05D006723 ORTHO05D008194 2.4e-10 68.9 41 68.3
THA.LOC104802371 Tarenaya hassleriana HOM05D006723 ORTHO05D008194 2.4e-10 68.9 76 48.7
TWI77G0276 Tripterygium wilfordii HOM05D006723 ORTHO05D008194 2.4e-10 68.9 76 48.7
PGR142G2324 Punica granatum HOM05D006723 ORTHO05D008194 3.1e-10 68.6 75 50.7
Aa31LG10G12530 Aethionema arabicum HOM05D006723 ORTHO05D008194 5.4e-10 67.8 77 46.8
Sed0006827 Sechium edule HOM05D006723 ORTHO05D008194 5.4e-10 67.8 41 70.7
Aqoxy2G00115 Aquilegia oxysepala HOM05D006723 ORTHO05D008194 7.0e-10 67.4 76 51.3
Medtr7g092470 Medicago truncatula HOM05D006723 ORTHO05D008194 7.0e-10 67.4 77 49.4
Lalb_Chr01g0017581 Lupinus albus HOM05D006723 ORTHO05D008194 9.1e-10 67.0 77 49.4
TPR.G4751 Trifolium pratense HOM05D006723 ORTHO05D008194 9.1e-10 67.0 75 50.7
AT3G57790 Arabidopsis thaliana HOM05D006723 ORTHO05D008194 1.2e-09 66.6 77 44.2
Phvul.001G138000 Phaseolus vulgaris HOM05D006723 ORTHO05D008194 1.2e-09 66.6 77 46.8
Ca_08490_v3 Cicer arietinum L. HOM05D006723 ORTHO05D008194 1.6e-09 66.2 77 49.4
Ca_30037_v3 Cicer arietinum L. HOM05D006723 ORTHO05D008194 1.6e-09 66.2 77 49.4
Lj1g0026461 Lotus japonicus HOM05D006723 ORTHO05D008194 1.6e-09 66.2 77 46.8
Thhalv10005936m.g Eutrema salsugineum HOM05D006723 ORTHO05D008194 2.0e-09 65.9 77 45.5
CDE07G0652 Ceratophyllum demersum HOM05D006723 ORTHO05D008194 2.7e-09 65.5 75 50.7
AL5G39460 Arabidopsis lyrata HOM05D006723 ORTHO05D008194 3.5e-09 65.1 77 44.2
Psat3g070520 Pisum sativum HOM05D006723 ORTHO05D008194 3.5e-09 65.1 75 49.3
Sp7g07890 Schrenkiella parvula HOM05D006723 ORTHO05D008194 3.5e-09 65.1 77 42.9
arahy.Tifrunner.gnm1.ann1.L8GYUR Arachis hypogaea HOM05D006723 ORTHO05D008194 4.5e-09 64.7 77 49.4
Carub.0005s2465 Capsella rubella HOM05D006723 ORTHO05D008194 4.5e-09 64.7 75 48.0
VMungo1383G2473 Vigna mungo HOM05D006723 ORTHO05D008194 4.5e-09 64.7 77 46.8
BcaC03g16488 Brassica carinata HOM05D006723 ORTHO05D008194 5.9e-09 64.3 99 37.4
A02p27180 Brassica napus HOM05D006723 ORTHO05D008194 5.9e-09 64.3 99 37.4
C02p43010 Brassica napus HOM05D006723 ORTHO05D008194 5.9e-09 64.3 99 37.4
BolC2t10343H Brassica oleracea HOM05D006723 ORTHO05D008194 5.9e-09 64.3 99 37.4
BraA02t07735Z Brassica rapa HOM05D006723 ORTHO05D008194 5.9e-09 64.3 99 37.4
Glyma.19G143700 Glycine max HOM05D006723 ORTHO05D008194 7.7e-09 63.9 99 40.4
EL10Ac3g06984 Beta vulgaris HOM05D006723 ORTHO05D008194 1.0e-08 63.5 75 48.0
Potri.006G057100 Populus trichocarpa HOM05D006723 ORTHO05D008194 1.0e-08 63.5 41 65.9
Ah.04g152030 Amaranthus hybridus HOM05D006723 ORTHO05D008194 1.3e-08 63.2 75 45.3
BcaB04g19408 Brassica carinata HOM05D006723 ORTHO05D008194 1.3e-08 63.2 99 36.4
CAN.G316.3 Capsicum annuum HOM05D006723 ORTHO05D008194 1.3e-08 63.2 75 50.7
Os09g0487600 Oryza sativa ssp. japonica HOM05D006723 ORTHO05D008194 1.3e-08 63.2 41 65.9
RcHm_v2.0_Chr3g0480761 Rosa chinensis HOM05D006723 ORTHO05D008194 1.3e-08 63.2 76 51.3
Zm00001eb316640 Zea mays HOM05D006723 ORTHO05D008194 1.3e-08 63.2 41 65.9
arahy.Tifrunner.gnm1.ann1.T5X6Q2 Arachis hypogaea HOM05D006723 ORTHO05D008194 2.2e-08 62.4 77 48.1
CARHR168110 Cardamine hirsuta HOM05D006723 ORTHO05D008194 2.2e-08 62.4 99 37.4
FvH4_6g22970 Fragaria vesca HOM05D006723 ORTHO05D008194 2.9e-08 62.0 76 48.7
FAN02G4120 Fragaria x ananassa HOM05D006723 ORTHO05D008194 2.9e-08 62.0 76 48.7
HanXRQChr01g0008611 Helianthus annuus HOM05D006723 ORTHO05D008194 2.9e-08 62.0 75 46.7
Sc15g0003630 Simmondsia chinensis HOM05D006723 ORTHO05D008194 6.5e-08 60.8 75 41.3
FAN09G4898 Fragaria x ananassa HOM05D006723 ORTHO05D008194 8.5e-08 60.5 72 48.6
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 1.9e-07 59.3 76 36.8
Migut.J01796 Erythranthe guttata HOM05D006723 ORTHO05D008194 1.9e-07 59.3 75 48.0
MSTRG.19888 Avicennia marina HOM05D006723 ORTHO05D008194 3.2e-07 58.5 75 45.3
MBI01_g40600_MAGBIO Magnolia biondii HOM05D006723 ORTHO05D008194 3.2e-07 58.5 75 48.0
Oeu064326.1 Olea europaea HOM05D006723 ORTHO05D008194 5.5e-07 57.8 99 41.4
Atru.chr1.947 Acer truncatum HOM05D006723 ORTHO05D008194 7.2e-07 57.4 75 48.0
Haze_19924 Corylus avellana HOM05D000001 ORTHO05D008194 7.2e-07 57.4 75 45.3
Dinv18102 Davidia involucrata HOM05D006723 ORTHO05D008194 7.2e-07 57.4 76 47.4
Potri.016G051200 Populus trichocarpa HOM05D006723 ORTHO05D008194 1.6e-06 56.2 75 45.3
Sabra16G0055000 Salix brachista HOM05D000001 ORTHO05D008194 1.6e-06 56.2 75 46.7
Prupe.7G070000 Prunus persica HOM05D006723 ORTHO05D008194 2.1e-06 55.8 75 46.7
unitig_22.g6514 Utricularia gibba HOM05D006723 ORTHO05D008194 2.1e-06 55.8 98 35.7
CANSAT80G0702 Cannabis sativa HOM05D006723 ORTHO05D008194 2.7e-06 55.5 98 40.8
Cfa016879 Carpinus fangiana HOM05D006723 ORTHO05D008194 6.1e-06 54.3 75 44.0


User provided reference genes

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