Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 0.0e+00 1087.0 522 100.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 6.2e-230 800.8 500 78.4
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 8.0e-230 800.4 500 79.8
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 3.3e-215 751.9 496 74.8
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 6.0e-209 731.1 461 77.9
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 9.6e-207 723.8 461 77.4
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.3e-168 596.3 376 79.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 5.9e-140 501.9 497 53.5
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 5.5e-138 495.4 532 49.8
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.1e-133 481.1 451 55.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-130 471.1 484 51.2
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.5e-122 443.4 499 48.5
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 9.5e-122 441.4 529 46.9
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 9.8e-119 431.4 535 46.2
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.9e-115 419.5 469 50.3
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.0e-115 419.1 469 50.5
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-114 417.2 443 49.7
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 6.2e-113 412.1 370 55.1
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 8.0e-113 411.8 517 45.5
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 4.3e-106 389.4 503 45.7
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.2e-105 387.9 464 46.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 2.6e-103 380.2 490 44.7
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 7.5e-103 378.6 460 45.9
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 2.9e-102 376.7 474 44.9
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.1e-101 372.9 466 44.0
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-100 369.4 466 43.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 5.1e-99 365.9 363 53.7
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.1e-98 364.8 504 42.1
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.1e-98 364.8 467 45.2
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.9e-98 364.0 450 45.6
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 3.3e-98 363.2 460 44.1
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 4.3e-98 362.8 453 45.3
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.2e-97 361.3 476 43.3
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 2.1e-97 360.5 457 46.2
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 2.8e-97 360.1 502 43.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.4e-96 357.8 506 42.5
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 5.2e-96 355.9 390 47.2
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 8.9e-96 355.1 473 45.0
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-95 354.4 486 42.4
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.0e-95 354.0 456 43.4
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 4.4e-95 352.8 440 45.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 4.4e-95 352.8 498 42.0
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 7.6e-95 352.1 451 46.6
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.3e-94 351.3 494 41.5
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 3.8e-94 349.7 382 48.7
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.9e-93 347.4 462 43.3
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.4e-93 347.1 458 44.5
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 4.2e-93 346.3 483 42.4
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.2e-93 346.3 465 44.3
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.5e-92 343.2 451 43.9
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 1.3e-91 341.3 458 43.7
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 5.6e-90 335.9 493 41.6
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.8e-88 330.9 442 44.3
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 4.0e-88 329.7 377 48.5
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 4.0e-88 329.7 452 43.8
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.3e-88 329.3 447 43.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.3e-88 329.3 457 42.7
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 6.9e-88 328.9 491 39.7
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.7e-86 324.3 309 51.8
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 6.4e-86 322.4 449 43.0
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 6.4e-86 322.4 455 41.3
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 8.4e-86 322.0 363 49.3
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-85 320.9 454 41.4
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.4e-85 320.5 475 39.8
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 2.4e-85 320.5 309 53.7
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.2e-84 318.2 467 42.6
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.1e-84 317.4 390 45.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.7e-83 314.3 444 41.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.3e-82 310.1 451 41.0
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 4.8e-81 306.2 385 48.6
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-79 301.2 361 45.4
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 7.6e-79 298.9 385 45.7
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.7e-78 297.7 386 44.6
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 4.9e-78 296.2 316 48.7
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.4e-77 294.7 456 38.6
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 2.4e-77 293.9 386 44.0
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 7.1e-77 292.4 371 43.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 9.3e-77 292.0 396 41.7
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 9.3e-77 292.0 385 43.9
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.1e-76 290.8 368 44.6
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.0e-75 287.0 479 39.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 2.5e-74 283.9 456 38.8
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 5.6e-74 282.7 463 39.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 9.6e-74 282.0 555 34.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.6e-73 281.2 463 39.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 2.1e-73 280.8 446 39.5
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.8e-73 280.4 442 39.8
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 8.1e-73 278.9 463 38.9
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.8e-72 277.7 463 38.9
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 3.1e-72 276.9 453 40.4
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 4.0e-72 276.6 448 37.9
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 6.9e-72 275.8 446 40.1
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 9.0e-72 275.4 465 37.6
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.2e-71 275.0 444 39.4
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.2e-71 275.0 382 44.0
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.5e-71 274.6 444 39.6
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.6e-71 272.3 444 38.7
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 6.0e-68 262.7 460 37.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 2.5e-66 257.3 460 37.2
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.5e-66 257.3 460 36.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-65 254.6 446 36.8
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.1e-61 241.9 290 45.2
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.9e-61 241.1 518 33.4
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.0e-59 235.3 256 52.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.8e-59 234.6 441 36.7
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.9e-59 233.4 433 37.9
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.1e-59 233.0 297 42.8
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 9.0e-56 222.2 417 35.0
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 7.7e-55 219.2 552 30.4
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.7e-54 218.0 309 42.1
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-54 218.0 216 51.4
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 2.9e-54 217.2 326 40.5
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.5e-53 214.2 504 31.5
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 9.7e-50 202.2 314 39.2
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-49 201.8 353 38.0
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.8e-48 198.0 237 45.6
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.7e-46 191.4 147 61.2
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.0e-46 189.9 326 37.7
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 6.5e-46 189.5 147 63.3
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 7.2e-45 186.0 494 29.4
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.3e-43 181.0 246 43.9
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.8e-43 179.1 356 35.7
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.6e-42 177.6 385 32.7
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 5.7e-42 176.4 350 35.1
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.8e-41 174.1 327 36.7
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.8e-41 173.3 288 39.2
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.8e-41 173.3 288 39.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 7.0e-40 169.5 229 43.2
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.8e-38 163.7 557 26.8
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 4.2e-37 160.2 155 54.8
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.4e-37 159.1 555 26.5
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.6e-36 158.3 331 34.1
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 3.7e-33 147.1 240 37.5
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 2.2e-30 137.9 154 49.4
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.0e-30 136.7 404 29.2
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.5e-29 135.2 182 42.9
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 4.7e-28 130.2 104 62.5
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 3.0e-27 127.5 217 35.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 8.8e-27 125.9 173 40.5
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.6e-26 124.4 100 57.0
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.4e-26 124.0 291 31.3
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.4e-24 116.7 385 27.3
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.1e-24 115.9 272 32.4
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.5e-21 108.6 498 24.7
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.6e-20 105.1 115 47.0
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 6.8e-19 99.8 143 40.6
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.3e-17 95.5 192 33.9
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.7e-17 95.1 98 49.0
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.8e-17 94.4 378 27.5
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 1.3e-14 85.5 211 28.4
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.3e-14 84.7 232 28.4
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 5.5e-13 80.1 279 27.6
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 8.0e-12 76.3 126 34.1
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 3.0e-11 74.3 136 33.1
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 1.2e-10 72.4 222 26.1
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 1.2e-10 72.4 73 52.1
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 3.4e-10 70.9 405 23.5
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 7.5e-10 69.7 98 41.8
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.9e-09 67.0 242 28.1


User provided reference genes

Program Settings