Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.1e-152 540.8 276 100.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.8e-127 459.5 241 96.3
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.9e-117 424.9 231 90.0
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.8e-116 422.9 241 87.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.0e-115 419.5 241 87.1
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 7.8e-115 417.5 244 86.5
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 3.3e-105 385.6 232 81.0
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.2e-104 383.6 234 80.8
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 3.6e-104 382.1 244 76.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 8.0e-104 380.9 241 77.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.1e-103 380.6 241 76.3
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.4e-103 380.2 235 77.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 5.2e-103 378.3 241 81.3
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 6.8e-103 377.9 239 76.6
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 8.9e-103 377.5 241 76.8
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 2.0e-102 376.3 241 75.5
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.7e-101 373.2 241 74.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.7e-101 373.2 229 79.0
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 8.3e-101 370.9 241 75.5
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.1e-100 370.5 234 77.8
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.1e-100 370.5 229 77.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.4e-100 370.2 234 77.8
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.9e-100 369.8 239 75.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 3.2e-100 369.0 239 76.2
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 4.1e-100 368.6 241 74.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.1e-100 368.6 242 74.4
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.4e-100 368.2 241 75.1
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 7.0e-100 367.9 239 74.9
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.2e-99 367.1 241 75.5
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.6e-99 366.7 241 73.9
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 6.0e-99 364.8 241 74.3
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 7.8e-99 364.4 241 74.3
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.0e-98 364.0 241 74.7
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.7e-98 363.2 241 74.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.7e-98 363.2 239 72.8
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.7e-98 363.2 241 75.1
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.0e-98 362.5 241 74.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.9e-98 362.1 241 73.9
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 5.0e-98 361.7 232 75.4
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 5.0e-98 361.7 241 73.9
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 6.6e-98 361.3 241 74.7
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 6.6e-98 361.3 241 73.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 8.6e-98 360.9 230 76.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 8.6e-98 360.9 241 72.6
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 8.6e-98 360.9 229 76.4
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.5e-97 360.1 239 71.5
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 3.3e-97 359.0 231 75.8
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 3.3e-97 359.0 289 64.7
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 4.3e-97 358.6 241 72.2
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.3e-97 358.6 241 72.6
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.3e-97 358.6 239 73.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 7.3e-97 357.8 231 74.0
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 9.5e-97 357.5 230 73.0
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.6e-96 356.7 241 71.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.6e-96 355.5 241 72.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 6.2e-96 354.8 241 71.4
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.1e-96 354.4 222 78.4
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.1e-96 354.4 231 73.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 8.1e-96 354.4 239 72.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 8.1e-96 354.4 235 73.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.1e-95 354.0 241 71.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-95 354.0 240 72.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-95 354.0 240 72.5
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-95 353.2 239 72.8
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 2.3e-95 352.8 232 72.4
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.3e-95 352.8 241 73.0
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 2.3e-95 352.8 236 71.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.1e-95 352.4 240 69.6
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.0e-95 352.1 235 72.8
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 6.8e-95 351.3 240 69.6
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.9e-95 350.9 231 72.7
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.0e-94 349.7 240 70.4
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-94 349.7 231 73.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.6e-94 349.4 224 75.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.6e-94 349.4 228 73.7
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.4e-94 348.6 232 74.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 4.4e-94 348.6 265 67.5
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.3e-93 347.1 282 63.8
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 3.7e-93 345.5 249 67.5
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 6.4e-93 344.7 211 79.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.4e-92 341.7 236 71.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.1e-92 341.3 241 70.1
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.2e-91 340.5 240 69.6
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.2e-91 340.5 240 69.6
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.2e-91 340.5 240 69.6
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.2e-91 340.5 213 78.9
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.6e-91 340.1 266 65.0
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.6e-91 340.1 235 71.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 4.6e-91 338.6 240 70.0
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.0e-90 335.9 240 65.8
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.9e-90 335.5 240 65.8
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 3.9e-90 335.5 231 70.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.9e-90 335.5 240 68.8
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-89 333.2 339 53.1
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.3e-89 332.4 199 81.4
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.3e-89 332.4 240 68.8
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 5.6e-89 331.6 210 76.2
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 4.7e-88 328.6 212 74.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.1e-88 327.8 286 58.7
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.1e-87 325.9 202 78.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 7.6e-86 321.2 240 63.8
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.3e-85 320.5 240 66.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 6.0e-83 311.6 206 73.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 8.7e-82 307.8 214 68.7
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 4.4e-78 295.4 191 73.8
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.3e-77 293.9 240 65.0
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 2.3e-74 283.1 231 62.3
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.3e-73 279.3 232 57.3
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 2.8e-72 276.2 229 59.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.6e-72 275.8 176 73.3
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.2e-69 266.5 171 73.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.9e-65 253.4 221 54.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.3e-64 250.8 167 71.9
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.3e-61 240.7 150 78.7
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.8e-56 223.0 145 71.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.8e-56 222.2 142 77.5
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.8e-56 222.2 142 77.5
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.7e-53 213.8 191 55.5
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.2e-53 213.4 229 47.6
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 9.3e-52 208.0 133 72.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.1e-49 201.1 131 74.8
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.5e-49 199.9 127 80.3
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 7.4e-49 198.4 182 57.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 9.0e-47 191.4 125 70.4
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 3.4e-46 189.5 164 59.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 3.2e-44 183.0 119 77.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 9.4e-44 181.4 119 76.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 9.4e-44 181.4 121 72.7
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 4.6e-43 179.1 132 72.0
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 3.3e-41 172.9 120 71.7
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.7e-41 172.2 235 43.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.8e-34 148.3 129 63.6
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.3e-32 144.4 101 74.3
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.8e-31 140.6 121 62.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 7.0e-31 138.7 159 47.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 9.1e-31 138.3 85 77.6
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.7e-29 134.0 111 64.0
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 2.7e-27 126.7 81 74.1
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.0e-26 123.2 91 67.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 3.9e-26 122.9 86 67.4
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.8e-26 121.7 149 38.9
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 7.4e-25 118.6 237 34.2
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.5e-22 109.8 106 54.7
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.5e-22 109.4 100 64.0
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 5.5e-20 102.4 72 68.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 2.1e-19 100.5 183 30.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 4.4e-17 92.8 51 80.4
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.4e-15 87.8 54 74.1
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.8e-15 87.4 63 66.7
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 2.7e-11 73.6 162 35.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 4.8e-08 62.8 34 82.4
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-06 58.2 33 72.7
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 5.9e-06 55.8 30 80.0


User provided reference genes

Program Settings