Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 6.1e-67 257.3 126 100.0
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 3.1e-50 201.8 107 87.9
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 6.6e-45 184.1 126 73.8
Nitab4.5_0001279g0050 Nicotiana tabacum HOM05D013000 ORTHO05D011827 1.8e-34 149.4 118 66.9
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 1.0e-21 107.1 84 64.3
Nitab4.5_0000124g0030 Nicotiana tabacum HOM05D013000 ORTHO05D011827 1.3e-21 106.7 59 84.7
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.7e-21 106.3 84 64.3
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.7e-21 106.3 84 64.3
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 5.1e-21 104.8 84 64.3
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 5.1e-21 104.8 84 64.3
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 6.6e-21 104.4 84 63.1
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 6.6e-21 104.4 84 63.1
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 6.6e-21 104.4 84 63.1
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 8.7e-21 104.0 84 63.1
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 8.7e-21 104.0 84 63.1
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 8.7e-21 104.0 84 63.1
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 1.1e-20 103.6 119 48.7
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.5e-20 103.2 84 61.9
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 1.5e-20 103.2 84 61.9
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 1.5e-20 103.2 84 63.1
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 1.5e-20 103.2 84 63.1
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 1.9e-20 102.8 84 64.3
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 1.9e-20 102.8 146 43.8
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 1.9e-20 102.8 84 63.1
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.5e-20 102.4 84 63.1
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 2.5e-20 102.4 146 45.2
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 2.5e-20 102.4 84 63.1
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 2.5e-20 102.4 146 43.8
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 2.5e-20 102.4 84 61.9
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 2.5e-20 102.4 84 63.1
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 3.3e-20 102.1 84 61.9
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 3.3e-20 102.1 84 63.1
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 3.3e-20 102.1 84 60.7
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.3e-20 102.1 82 62.2
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 3.3e-20 102.1 84 61.9
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 4.3e-20 101.7 84 63.1
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 4.3e-20 101.7 84 61.9
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 4.3e-20 101.7 82 63.4
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 4.3e-20 101.7 84 61.9
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 4.3e-20 101.7 84 64.3
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 4.3e-20 101.7 84 60.7
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 5.6e-20 101.3 84 63.1
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 5.6e-20 101.3 146 43.8
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 5.6e-20 101.3 84 61.9
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 5.6e-20 101.3 84 60.7
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 5.6e-20 101.3 84 60.7
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 5.6e-20 101.3 84 61.9
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 5.6e-20 101.3 82 62.2
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 7.3e-20 100.9 84 60.7
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 7.3e-20 100.9 84 60.7
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 7.3e-20 100.9 84 60.7
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 9.6e-20 100.5 84 61.9
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 1.3e-19 100.1 82 62.2
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 1.3e-19 100.1 84 61.9
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 1.3e-19 100.1 84 61.9
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 1.3e-19 100.1 84 61.9
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 1.6e-19 99.8 84 60.7
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 1.6e-19 99.8 84 60.7
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 1.6e-19 99.8 84 60.7
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 2.1e-19 99.4 84 60.7
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.1e-19 99.4 84 59.5
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.1e-19 99.4 84 59.5
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 2.8e-19 99.0 84 58.3
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 2.8e-19 99.0 82 62.2
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 3.6e-19 98.6 147 43.5
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 3.6e-19 98.6 84 60.7
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 4.8e-19 98.2 84 58.3
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 4.8e-19 98.2 84 58.3
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 4.8e-19 98.2 84 58.3
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 6.2e-19 97.8 84 59.5
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 6.2e-19 97.8 82 59.8
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 6.2e-19 97.8 82 59.8
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 6.2e-19 97.8 82 59.8
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 6.2e-19 97.8 82 61.0
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 6.2e-19 97.8 82 61.0
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 8.1e-19 97.4 84 58.3
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 8.1e-19 97.4 84 57.1
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 8.1e-19 97.4 84 59.5
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 8.1e-19 97.4 82 58.5
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 8.1e-19 97.4 117 46.2
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 1.1e-18 97.1 84 58.3
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 1.1e-18 97.1 82 58.5
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 1.1e-18 97.1 82 58.5
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 1.1e-18 97.1 84 58.3
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 1.1e-18 97.1 84 59.5
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.4e-18 96.7 84 57.1
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 1.4e-18 96.7 84 58.3
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 1.4e-18 96.7 119 45.4
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 1.8e-18 96.3 82 58.5
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 1.8e-18 96.3 82 59.8
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 2.4e-18 95.9 119 47.1
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 2.4e-18 95.9 84 58.3
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 2.4e-18 95.9 82 59.8
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 2.4e-18 95.9 84 57.1
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 4.0e-18 95.1 84 58.3
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 4.0e-18 95.1 84 58.3
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 4.0e-18 95.1 84 54.8
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 4.0e-18 95.1 147 40.8
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 5.3e-18 94.7 84 58.3
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 5.3e-18 94.7 120 44.2
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 5.3e-18 94.7 147 40.8
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 6.9e-18 94.4 84 53.6
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 6.9e-18 94.4 82 57.3
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 6.9e-18 94.4 147 41.5
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 9.0e-18 94.0 82 58.5
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 9.0e-18 94.0 145 41.4
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 9.0e-18 94.0 82 58.5
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 1.2e-17 93.6 82 57.3
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 1.2e-17 93.6 82 57.3
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.2e-17 93.6 143 42.0
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 1.2e-17 93.6 82 56.1
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 1.2e-17 93.6 82 57.3
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.5e-17 93.2 82 57.3
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.5e-17 93.2 82 57.3
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 1.5e-17 93.2 82 58.5
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 2.0e-17 92.8 82 58.5
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 2.0e-17 92.8 84 56.0
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 2.0e-17 92.8 82 58.5
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 2.0e-17 92.8 82 57.3
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 2.0e-17 92.8 117 45.3
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 2.0e-17 92.8 84 57.1
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 2.6e-17 92.4 143 41.3
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 2.6e-17 92.4 82 58.5
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 2.6e-17 92.4 147 40.8
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 2.6e-17 92.4 147 40.8
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 2.6e-17 92.4 147 40.8
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 3.4e-17 92.0 82 57.3
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 3.4e-17 92.0 82 57.3
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 3.4e-17 92.0 82 57.3
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 3.4e-17 92.0 82 57.3
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 3.4e-17 92.0 82 57.3
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 3.4e-17 92.0 147 40.8
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 4.4e-17 91.7 82 56.1
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.4e-17 91.7 147 40.8
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 56.1
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 5.8e-17 91.3 84 56.0
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 5.8e-17 91.3 82 57.3
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 7.6e-17 90.9 82 56.1
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 9.9e-17 90.5 82 57.3
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 9.9e-17 90.5 143 40.6
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 9.9e-17 90.5 120 42.5
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 9.9e-17 90.5 120 41.7
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 9.9e-17 90.5 85 55.3
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.7e-16 89.7 82 56.1
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 2.2e-16 89.4 148 40.5
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 2.9e-16 89.0 82 53.7
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 2.9e-16 89.0 82 54.9
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 3.8e-16 88.6 82 54.9
Nitab4.5_0000283g0340 Nicotiana tabacum HOM05D013000 ORTHO05D011827 4.9e-16 88.2 59 78.0
Nitab4.5_0013470g0010 Nicotiana tabacum HOM05D013000 ORTHO05D011827 4.9e-16 88.2 53 84.9
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 6.4e-16 87.8 120 41.7
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 8.4e-16 87.4 133 40.6
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 1.4e-15 86.7 82 53.7
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.4e-15 86.7 82 52.4
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 1.4e-15 86.7 119 41.2
Nitab4.5_0002831g0030 Nicotiana tabacum HOM05D013000 ORTHO05D011827 7.1e-15 84.3 58 75.9
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 1.6e-14 83.2 122 41.0
Nitab4.5_0009437g0010 Nicotiana tabacum HOM05D013000 ORTHO05D011827 7.9e-14 80.9 58 72.4
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 5.6e-12 74.7 84 48.8
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 1.3e-11 73.6 82 45.1
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.6e-11 73.2 107 40.2
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-10 70.5 81 43.2
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 1.1e-10 70.5 82 43.9
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 1.5e-09 66.6 72 54.2
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 2.0e-09 66.2 81 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 9.9e-09 63.9 82 41.5
Nitab4.5_0001599g0150 Nicotiana tabacum HOM05D011079 ORTHO05D011827 9.9e-09 63.9 64 56.2
Nitab4.5_0000024g0090 Nicotiana tabacum HOM05D013000 ORTHO05D286651 1.3e-08 63.5 42 76.2
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 2.2e-08 62.8 32 81.2
Nitab4.5_0004474g0050 Nicotiana tabacum HOM05D011079 ORTHO05D011827 2.2e-08 62.8 61 57.4
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 3.8e-08 62.0 83 42.2
Nitab4.5_0000475g0060 Nicotiana tabacum HOM05D013000 ORTHO05D011827 6.4e-08 61.2 36 77.8
Peaxi162Scf00897g00411 Petunia axillaris HOM05D000030 ORTHO05D000009 6.4e-08 61.2 62 46.8
Nitab4.5_0000138g0270 Nicotiana tabacum HOM05D011079 ORTHO05D011827 3.2e-07 58.9 68 50.0
PGSC0003DMG401018444 Solanum tuberosum HOM05D011079 ORTHO05D011827 4.6e-06 55.1 64 45.3


User provided reference genes

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